Mercurial > repos > galaxyp > openms
diff README_REPO.md @ 2:cf0d72c7b482 draft
Update.
| author | galaxyp |
|---|---|
| date | Fri, 10 May 2013 17:31:05 -0400 |
| parents | ba86fd127f5a |
| children |
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--- a/README_REPO.md Wed Dec 19 00:33:53 2012 -0500 +++ b/README_REPO.md Fri May 10 17:31:05 2013 -0400 @@ -1,9 +1,7 @@ # OpenMS -This repository is in an early alpha state and many OpenMS tools are -not yet available or are largely untested. If there is a tool that is -part of OpenMS but not available here, let John Chilton -(jmchilton@gmail.com) and he will try to add it. +If there is a tool that is part of OpenMS but not available here, let +John Chilton (jmchilton@gmail.com) and he will try to add it. These tools require Galaxy to be equipped with common proteomic datatypes. These can be obtained by installing Ira Cooke's ProtK via @@ -14,12 +12,11 @@ # Installing -These tools all require OpenMS and may require other dependencies -(such as PepNovo for instance). +These tools all require OpenMS (at least version 1.10) and may require +other dependencies (such as PepNovo for instance). For Galaxy-P we are installing this tool via CloudBioLinux -(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio\ -_proteomics.py). While +(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While this fabric script may not be exactly appropriate for your environment it may serve as a template for how to install this software.