Mercurial > repos > galaxyp > openms_consensusid

diff generate-foo.sh @ 17:abffdfee3021 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms"
author galaxyp
date Mon, 22 Feb 2021 10:46:10 +0000
parents feebe2054e40
children f4be248c3d47
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--- a/generate-foo.sh	Fri Nov 06 19:49:28 2020 +0000
+++ b/generate-foo.sh	Mon Feb 22 10:46:10 2021 +0000
@@ -83,7 +83,7 @@
         #echo python3 fill_ctd_clargs.py --ctd $ini $cli
         # using eval: otherwise for some reason quoted values are not used properly ('A B' -> ["'A", "B'"])
         # >&2 echo "python3 fill_ctd_clargs.py --ctd $ini $cli"
-        eval "python3 fill_ctd_clargs.py --ctd $ini $cli" > "$ctdtmp"
+        eval "python3 fill_ctd_clargs.py --ini_file $ini --ctd_file ctd/$tool_id.ctd $cli" > "$ctdtmp"
         # echo $ctdtmp
         # >&2 cat $ctdtmp
         testtmp=$(mktemp)