Mercurial > repos > galaxyp > openms_featurefindercentroided
diff FeatureFinderCentroided.xml @ 1:9e6a24fc4f4a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 16:03:41 -0400 |
| parents | 7dd3b4327a17 |
| children | fd386c78f533 |
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--- a/FeatureFinderCentroided.xml Wed Mar 01 12:29:02 2017 -0500 +++ b/FeatureFinderCentroided.xml Tue Apr 18 16:03:41 2017 -0400 @@ -55,7 +55,12 @@ -algorithm:feature:min_score $param_algorithm_feature_min_score #end if #if $param_algorithm_feature_reported_mz: - -algorithm:feature:reported_mz $param_algorithm_feature_reported_mz + -algorithm:feature:reported_mz + #if " " in str($param_algorithm_feature_reported_mz): + "$param_algorithm_feature_reported_mz" + #else + $param_algorithm_feature_reported_mz + #end if #end if #if $param_algorithm_user_seed_rt_tolerance: -algorithm:user-seed:rt_tolerance $param_algorithm_user_seed_rt_tolerance @@ -107,7 +112,12 @@ -algorithm:feature:max_rt_span $adv_opts.param_algorithm_feature_max_rt_span #end if #if $adv_opts.param_algorithm_feature_rt_shape: - -algorithm:feature:rt_shape $adv_opts.param_algorithm_feature_rt_shape + -algorithm:feature:rt_shape + #if " " in str($adv_opts.param_algorithm_feature_rt_shape): + "$adv_opts.param_algorithm_feature_rt_shape" + #else + $adv_opts.param_algorithm_feature_rt_shape + #end if #end if #if $adv_opts.param_algorithm_feature_max_intersection: -algorithm:feature:max_intersection $adv_opts.param_algorithm_feature_max_intersection