Mercurial > repos > galaxyp > openms_openswathchromatogramextractor
comparison OpenSwathChromatogramExtractor.xml @ 1:47729465a3d3 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:35:25 -0400 |
| parents | f41f97505717 |
| children | ebe0e9442a29 |
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| 0:f41f97505717 | 1:47729465a3d3 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [Targeted Experiments]--> | 3 <!--Proposed Tool Section: [Targeted Experiments]--> |
| 4 <tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.1.0"> | 4 <tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.2.0"> |
| 5 <description>Extract chromatograms (XIC) from a MS2 map file.</description> | 5 <description>Extract chromatograms (XIC) from a MS2 map file.</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">OpenSwathChromatogramExtractor</token> | 7 <token name="@EXECUTABLE@">OpenSwathChromatogramExtractor</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 42 #end if | 42 #end if |
| 43 #if $param_extract_MS1: | 43 #if $param_extract_MS1: |
| 44 -extract_MS1 | 44 -extract_MS1 |
| 45 #end if | 45 #end if |
| 46 #if $param_extraction_function: | 46 #if $param_extraction_function: |
| 47 -extraction_function $param_extraction_function | 47 -extraction_function |
| 48 #if " " in str($param_extraction_function): | |
| 49 "$param_extraction_function" | |
| 50 #else | |
| 51 $param_extraction_function | |
| 52 #end if | |
| 48 #end if | 53 #end if |
| 49 #if $param_model_type: | 54 #if $param_model_type: |
| 50 -model:type $param_model_type | 55 -model:type |
| 56 #if " " in str($param_model_type): | |
| 57 "$param_model_type" | |
| 58 #else | |
| 59 $param_model_type | |
| 60 #end if | |
| 51 #end if | 61 #end if |
| 52 #if $param_model_symmetric_regression: | 62 #if $param_model_symmetric_regression: |
| 53 -model:symmetric_regression | 63 -model:symmetric_regression |
| 54 #end if | 64 #end if |
| 55 #if $adv_opts.adv_opts_selector=='advanced': | 65 #if $adv_opts.adv_opts_selector=='advanced': |