diff OpenSwathChromatogramExtractor.xml @ 1:47729465a3d3 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14

--- a/OpenSwathChromatogramExtractor.xml	Wed Mar 01 12:43:05 2017 -0500
+++ b/OpenSwathChromatogramExtractor.xml	Wed Aug 09 09:35:25 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [Targeted Experiments]-->
-<tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.1.0">
+<tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.2.0">
   <description>Extract chromatograms (XIC) from a MS2 map file.</description>
   <macros>
     <token name="@EXECUTABLE@">OpenSwathChromatogramExtractor</token>
@@ -44,10 +44,20 @@
   -extract_MS1
 #end if
 #if $param_extraction_function:
-  -extraction_function $param_extraction_function
+  -extraction_function
+  #if " " in str($param_extraction_function):
+    "$param_extraction_function"
+  #else
+    $param_extraction_function
+  #end if
 #end if
 #if $param_model_type:
-  -model:type $param_model_type
+  -model:type
+  #if " " in str($param_model_type):
+    "$param_model_type"
+  #else
+    $param_model_type
+  #end if
 #end if
 #if $param_model_symmetric_regression:
   -model:symmetric_regression