diff OpenSwathRTNormalizer.xml @ 7:d9747fc216e9 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/OpenSwathRTNormalizer.xml	Tue Mar 20 14:39:44 2018 -0400
+++ b/OpenSwathRTNormalizer.xml	Wed May 15 08:04:50 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenSwathRTNormalizer
+  <command detect_errors="aggressive"><![CDATA[OpenSwathRTNormalizer
 
 -in
   #for token in $param_in:
@@ -312,7 +312,7 @@
   -algorithm:Scores:use_uis_scores
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
       <sanitizer>
@@ -452,5 +452,5 @@
   <help>This tool will take a description of RT peptides and their normalized retention time to write out a transformation file on how to transform the RT space into the normalized space.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathRTNormalizer.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathRTNormalizer.html</help>
 </tool>