Mercurial > repos > galaxyp > openms_openswathworkflow
comparison OpenSwathWorkflow.xml @ 7:091d4e82839a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 08:30:28 -0400 |
parents | 56988709dec6 |
children | 3967f7cf35b9 |
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6:94d245e69164 | 7:091d4e82839a |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>OpenSwathWorkflow | 13 <command detect_errors="aggressive"><![CDATA[OpenSwathWorkflow |
14 | 14 |
15 -in | 15 -in |
16 #for token in $param_in: | 16 #for token in $param_in: |
17 $token | 17 $token |
18 #end for | 18 #end for |
397 #end if | 397 #end if |
398 #if $adv_opts.param_Scoring_Scores_use_uis_scores: | 398 #if $adv_opts.param_Scoring_Scores_use_uis_scores: |
399 -Scoring:Scores:use_uis_scores | 399 -Scoring:Scores:use_uis_scores |
400 #end if | 400 #end if |
401 #end if | 401 #end if |
402 </command> | 402 ]]></command> |
403 <inputs> | 403 <inputs> |
404 <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) "> | 404 <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) "> |
405 <sanitizer> | 405 <sanitizer> |
406 <valid initial="string.printable"> | 406 <valid initial="string.printable"> |
407 <remove value="'"/> | 407 <remove value="'"/> |
592 <data name="param_out_chrom" format="mzml"/> | 592 <data name="param_out_chrom" format="mzml"/> |
593 </outputs> | 593 </outputs> |
594 <help>Complete workflow to run OpenSWATH | 594 <help>Complete workflow to run OpenSWATH |
595 | 595 |
596 | 596 |
597 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathWorkflow.html</help> | 597 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathWorkflow.html</help> |
598 </tool> | 598 </tool> |