Mercurial > repos > galaxyp > openms_phosphoscoring
comparison PhosphoScoring.xml @ 1:e52a682b5b70 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author | galaxyp |
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date | Wed, 09 Aug 2017 09:20:45 -0400 |
parents | 0a1e6a367122 |
children | 98363174ac01 |
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0:0a1e6a367122 | 1:e52a682b5b70 |
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1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
3 <!--Proposed Tool Section: [ID Processing]--> | 3 <!--Proposed Tool Section: [ID Processing]--> |
4 <tool id="PhosphoScoring" name="PhosphoScoring" version="2.1.0"> | 4 <tool id="PhosphoScoring" name="PhosphoScoring" version="2.2.0"> |
5 <description>Scores potential phosphorylation sites in order to localize the most probable sites.</description> | 5 <description>Scores potential phosphorylation sites in order to localize the most probable sites.</description> |
6 <macros> | 6 <macros> |
7 <token name="@EXECUTABLE@">PhosphoScoring</token> | 7 <token name="@EXECUTABLE@">PhosphoScoring</token> |
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
23 #end if | 23 #end if |
24 #if $param_fragment_mass_tolerance: | 24 #if $param_fragment_mass_tolerance: |
25 -fragment_mass_tolerance $param_fragment_mass_tolerance | 25 -fragment_mass_tolerance $param_fragment_mass_tolerance |
26 #end if | 26 #end if |
27 #if $param_fragment_mass_unit: | 27 #if $param_fragment_mass_unit: |
28 -fragment_mass_unit $param_fragment_mass_unit | 28 -fragment_mass_unit |
29 #if " " in str($param_fragment_mass_unit): | |
30 "$param_fragment_mass_unit" | |
31 #else | |
32 $param_fragment_mass_unit | |
33 #end if | |
29 #end if | 34 #end if |
30 #if $param_max_peptide_length: | 35 #if $param_max_peptide_length: |
31 -max_peptide_length $param_max_peptide_length | 36 -max_peptide_length $param_max_peptide_length |
32 #end if | 37 #end if |
33 #if $param_max_num_perm: | 38 #if $param_max_num_perm: |