Mercurial > repos > galaxyp > openms_phosphoscoring

diff PhosphoScoring.xml @ 1:e52a682b5b70 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:20:45 -0400
parents 0a1e6a367122
children 98363174ac01
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--- a/PhosphoScoring.xml	Wed Mar 01 12:33:19 2017 -0500
+++ b/PhosphoScoring.xml	Wed Aug 09 09:20:45 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [ID Processing]-->
-<tool id="PhosphoScoring" name="PhosphoScoring" version="2.1.0">
+<tool id="PhosphoScoring" name="PhosphoScoring" version="2.2.0">
   <description>Scores potential phosphorylation sites in order to localize the most probable sites.</description>
   <macros>
     <token name="@EXECUTABLE@">PhosphoScoring</token>
@@ -25,7 +25,12 @@
   -fragment_mass_tolerance $param_fragment_mass_tolerance
 #end if
 #if $param_fragment_mass_unit:
-  -fragment_mass_unit $param_fragment_mass_unit
+  -fragment_mass_unit
+  #if " " in str($param_fragment_mass_unit):
+    "$param_fragment_mass_unit"
+  #else
+    $param_fragment_mass_unit
+  #end if
 #end if
 #if $param_max_peptide_length:
   -max_peptide_length $param_max_peptide_length