Mercurial > repos > galaxyp > openms_phosphoscoring
comparison PhosphoScoring.xml @ 1:e52a682b5b70 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:20:45 -0400 |
| parents | 0a1e6a367122 |
| children | 98363174ac01 |
comparison
equal
deleted
inserted
replaced
| 0:0a1e6a367122 | 1:e52a682b5b70 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [ID Processing]--> | 3 <!--Proposed Tool Section: [ID Processing]--> |
| 4 <tool id="PhosphoScoring" name="PhosphoScoring" version="2.1.0"> | 4 <tool id="PhosphoScoring" name="PhosphoScoring" version="2.2.0"> |
| 5 <description>Scores potential phosphorylation sites in order to localize the most probable sites.</description> | 5 <description>Scores potential phosphorylation sites in order to localize the most probable sites.</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">PhosphoScoring</token> | 7 <token name="@EXECUTABLE@">PhosphoScoring</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 23 #end if | 23 #end if |
| 24 #if $param_fragment_mass_tolerance: | 24 #if $param_fragment_mass_tolerance: |
| 25 -fragment_mass_tolerance $param_fragment_mass_tolerance | 25 -fragment_mass_tolerance $param_fragment_mass_tolerance |
| 26 #end if | 26 #end if |
| 27 #if $param_fragment_mass_unit: | 27 #if $param_fragment_mass_unit: |
| 28 -fragment_mass_unit $param_fragment_mass_unit | 28 -fragment_mass_unit |
| 29 #if " " in str($param_fragment_mass_unit): | |
| 30 "$param_fragment_mass_unit" | |
| 31 #else | |
| 32 $param_fragment_mass_unit | |
| 33 #end if | |
| 29 #end if | 34 #end if |
| 30 #if $param_max_peptide_length: | 35 #if $param_max_peptide_length: |
| 31 -max_peptide_length $param_max_peptide_length | 36 -max_peptide_length $param_max_peptide_length |
| 32 #end if | 37 #end if |
| 33 #if $param_max_num_perm: | 38 #if $param_max_num_perm: |