comparison SpectraMerger.xml @ 7:106130886208 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

6:f8717535fbe3

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SpectraMerger

#if $param_in:
  -in $param_in
#end if
#if $param_out:

#end if
    #if $adv_opts.param_algorithm_average_gaussian_cutoff:
  -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff
#end if
#end if
</command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/>
    <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) ">
      <option value="average_gaussian" selected="true">average_gaussian</option>
      <option value="average_tophat">average_tophat</option>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Merges spectra (each MS level separately), increasing S/N ratios.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraMerger.html</help>
</tool>

7:106130886208

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[SpectraMerger

#if $param_in:
  -in $param_in
#end if
#if $param_out:

#end if
    #if $adv_opts.param_algorithm_average_gaussian_cutoff:
  -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff
#end if
#end if
]]></command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/>
    <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) ">
      <option value="average_gaussian" selected="true">average_gaussian</option>
      <option value="average_tophat">average_tophat</option>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Merges spectra (each MS level separately), increasing S/N ratios.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraMerger.html</help>
</tool>