diff SpectraMerger.xml @ 7:106130886208 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/SpectraMerger.xml	Tue Mar 20 15:20:26 2018 -0400
+++ b/SpectraMerger.xml	Fri May 17 05:05:56 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SpectraMerger
+  <command detect_errors="aggressive"><![CDATA[SpectraMerger
 
 #if $param_in:
   -in $param_in
@@ -112,7 +112,7 @@
   -algorithm:average_gaussian:cutoff $adv_opts.param_algorithm_average_gaussian_cutoff
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input mzML file" help="(-in) "/>
     <param name="param_merging_method" display="radio" type="select" optional="False" value="average_gaussian" label="Method of merging which should be used" help="(-merging_method) ">
@@ -173,5 +173,5 @@
   <help>Merges spectra (each MS level separately), increasing S/N ratios.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraMerger.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraMerger.html</help>
 </tool>