comparison TICCalculator.xml @ 0:cb4738f26b96 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 12:51:22 -0500
parents
children 1373f6071423
comparison
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-1:000000000000 0:cb4738f26b96
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="TICCalculator" name="TICCalculator" version="2.1.0">
5 <description>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).</description>
6 <macros>
7 <token name="@EXECUTABLE@">TICCalculator</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>TICCalculator
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_read_method:
19 -read_method $param_read_method
20 #end if
21 #if $param_loadData:
22 -loadData $param_loadData
23 #end if
24 #if $adv_opts.adv_opts_selector=='advanced':
25 #if $adv_opts.param_force:
26 -force
27 #end if
28 #end if
29 &gt; $param_stdout
30 </command>
31 <inputs>
32 <param name="param_in" type="data" format="mgf,mzml,mzxml,tabular,featurexml,consensusxml" optional="False" label="Input file to convert" help="(-in) "/>
33 <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) ">
34 <option value="regular" selected="true">regular</option>
35 <option value="indexed">indexed</option>
36 <option value="indexed_parallel">indexed_parallel</option>
37 <option value="streaming">streaming</option>
38 <option value="cached">cached</option>
39 <option value="cached_parallel">cached_parallel</option>
40 </param>
41 <param name="param_loadData" display="radio" type="select" optional="False" value="true" label="Whether to actually load and decode the binary data (or whether to skip decoding the binary data)" help="(-loadData) ">
42 <option value="true" selected="true">true</option>
43 <option value="false">false</option>
44 </param>
45 <expand macro="advanced_options">
46 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
47 </expand>
48 </inputs>
49 <outputs>
50 <data name="param_stdout" format="text" label="Output from stdout"/>
51 </outputs>
52 <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).
53
54
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/doxygen/parameters/output/UTILS_TICCalculator.html</help>
56 </tool>