Mercurial > repos > galaxyp > openms_ticcalculator
comparison TICCalculator.xml @ 0:cb4738f26b96 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
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date | Wed, 01 Mar 2017 12:51:22 -0500 |
parents | |
children | 1373f6071423 |
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-1:000000000000 | 0:cb4738f26b96 |
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1 <?xml version='1.0' encoding='UTF-8'?> | |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
3 <!--Proposed Tool Section: [Utilities]--> | |
4 <tool id="TICCalculator" name="TICCalculator" version="2.1.0"> | |
5 <description>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).</description> | |
6 <macros> | |
7 <token name="@EXECUTABLE@">TICCalculator</token> | |
8 <import>macros.xml</import> | |
9 </macros> | |
10 <expand macro="references"/> | |
11 <expand macro="stdio"/> | |
12 <expand macro="requirements"/> | |
13 <command>TICCalculator | |
14 | |
15 #if $param_in: | |
16 -in $param_in | |
17 #end if | |
18 #if $param_read_method: | |
19 -read_method $param_read_method | |
20 #end if | |
21 #if $param_loadData: | |
22 -loadData $param_loadData | |
23 #end if | |
24 #if $adv_opts.adv_opts_selector=='advanced': | |
25 #if $adv_opts.param_force: | |
26 -force | |
27 #end if | |
28 #end if | |
29 > $param_stdout | |
30 </command> | |
31 <inputs> | |
32 <param name="param_in" type="data" format="mgf,mzml,mzxml,tabular,featurexml,consensusxml" optional="False" label="Input file to convert" help="(-in) "/> | |
33 <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) "> | |
34 <option value="regular" selected="true">regular</option> | |
35 <option value="indexed">indexed</option> | |
36 <option value="indexed_parallel">indexed_parallel</option> | |
37 <option value="streaming">streaming</option> | |
38 <option value="cached">cached</option> | |
39 <option value="cached_parallel">cached_parallel</option> | |
40 </param> | |
41 <param name="param_loadData" display="radio" type="select" optional="False" value="true" label="Whether to actually load and decode the binary data (or whether to skip decoding the binary data)" help="(-loadData) "> | |
42 <option value="true" selected="true">true</option> | |
43 <option value="false">false</option> | |
44 </param> | |
45 <expand macro="advanced_options"> | |
46 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
47 </expand> | |
48 </inputs> | |
49 <outputs> | |
50 <data name="param_stdout" format="text" label="Output from stdout"/> | |
51 </outputs> | |
52 <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking). | |
53 | |
54 | |
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/doxygen/parameters/output/UTILS_TICCalculator.html</help> | |
56 </tool> |