Mercurial > repos > galaxyp > pepquery
changeset 1:528bcf03e561 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery commit 542fee4158c3dbd0c5ad8cd7e97b77f55982e0bf"
| author | galaxyp |
|---|---|
| date | Fri, 17 Jul 2020 17:05:41 -0400 |
| parents | 32d3818fc635 |
| children | 5b5a9f59e2c7 |
| files | macros.xml pepquery.xml |
| diffstat | 2 files changed, 6 insertions(+), 1 deletions(-) [+] |
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--- a/macros.xml Wed Jan 22 17:12:37 2020 -0500 +++ b/macros.xml Fri Jul 17 17:05:41 2020 -0400 @@ -1,5 +1,5 @@ <macros> - <token name="@VERSION@">1.3.0</token> + <token name="@VERSION@">1.6.0</token> <xml name="modifications"> <option value="1">HexNAc of T (203.07937251951) modaa</option> <option value="2">HexNAc of S (203.07937251951) modaa</option>
--- a/pepquery.xml Wed Jan 22 17:12:37 2020 -0500 +++ b/pepquery.xml Fri Jul 17 17:05:41 2020 -0400 @@ -41,6 +41,7 @@ #end if #end if #end if + -indexType $req_inputs.indexType #if $modifications.fixed_mod -fixMod '$modifications.fixed_mod' #end if @@ -144,6 +145,10 @@ </conditional> <param name="db_file" type="data" format="fasta" label="Protein Reference Database File" argument="-db" help="an input sequence that matches a reference will be ignored." /> <param name="spectrum_file" type="data" format="mgf" label="Spectrum File" argument="-ms" help="Spectrum file used for identification, mgf format" /> + <param name="indexType" type="select" label="Report Spectrum Scan as" argument="-indexType" help="" > + <option value="1" selected="true">index (1-based) in MGF</option> + <option value="2">spectrum title in MGF</option> + </param> </section> <section name="modifications" title="Modifications" expanded="false"> <param name="fixed_mod" type="select" label="Fixed modification(s)" multiple="true" argument="-fixMod" help="Fixed modification">