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21 This repository contains Galaxy tools for running PeptideShaker (http://code.google.com/p/peptide-shaker/), an application for integrating proteomics identification data from multiple search engines.
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35 <meta name="og:description" content="This repository contains Galaxy tools for running PeptideShaker (http://code.google.com/p/peptide-shaker/), an application for integrating proteomics identification data from multiple search engines."/>
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230 <header id="repo-warning" role="banner" class="aui-message-banner warning">
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232 <span class="aui-icon aui-icon-warning"></span>
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233 <span class="message">
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235 </div>
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236 </header>
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237 <script id="repo-warning-template" type="text/html">
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238
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239
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240
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241
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242
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243 This repository's ownership is pending transfer to <a href="/[[username]]">[[username]]</a>.
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244 Visit the <a href="/galaxyp/galaxyp-toolshed-peptideshaker/admin/transfer">transfer repository page</a> to view more details.
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245
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246
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247 </script>
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248 <header id="repo-header" class="subhead row">
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249 <div class="center-content">
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250 <div class="repo-summary with-repo-watch">
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251 <a class="repo-avatar-link" href="/galaxyp/galaxyp-toolshed-peptideshaker">
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252 <span class="repo-avatar-container size64" title="galaxyp/galaxyp-toolshed-peptideshaker">
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253 <img alt="galaxyp/galaxyp-toolshed-peptideshaker" src="https://d3oaxc4q5k2d6q.cloudfront.net/m/968d9745b7be/img/language-avatars/default_64.png">
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254 </span>
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255
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256
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257 </a>
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258 <h1><a class="repo-link" href="/galaxyp/galaxyp-toolshed-peptideshaker">galaxyp-toolshed-peptideshaker</a></h1>
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259 <ul class="repo-metadata clearfix">
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260 <li>
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261 <a class="user" href="/galaxyp">
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262 <span class="aui-icon aui-icon-small aui-iconfont-user">User icon</span>
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263 <span>galaxyp</span>
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264 </a>
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265 </li>
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266
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267
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268
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269 </ul>
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270 </div>
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271 <div id="repo-toolbar" class="bb-toolbar">
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272
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273 <div class="aui-buttons">
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274 <a id="repo-clone-button" class="aui-button aui-style" href="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker">
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275 <span class="aui-icon aui-icon-small aui-iconfont-devtools-clone"></span>
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276 <span>Clone</span>
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277 <span class="aui-icon-dropdown"></span>
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278 </a>
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279 <a id="fork-button" class="aui-button aui-style"
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280 href="/galaxyp/galaxyp-toolshed-peptideshaker/fork">
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281 <span class="aui-icon aui-icon-small aui-iconfont-devtools-fork"></span>
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282 <span>Fork</span>
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283 </a>
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284 </div>
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285 <div class="aui-buttons">
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286 <a id="compare-button" class="aui-button aui-style"
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287 href="/galaxyp/galaxyp-toolshed-peptideshaker/compare">
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288 <span class="icon compare"></span>
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289 <span>Compare</span>
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290 </a>
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291 <a id="pull-request-button" class="aui-button aui-style"
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292 href="/galaxyp/galaxyp-toolshed-peptideshaker/pull-request/new">
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293 <span class="aui-icon aui-icon-small aui-iconfont-devtools-pull-request">Pull request icon</span>
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294 <span>Pull request</span>
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295 </a>
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296 </div>
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297
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298
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299
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300
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301 <div id="repo-clone-dialog" class="clone-dialog hidden">
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302
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303 <div class="clone-url">
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304 <div class="aui-buttons">
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305 <a href="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
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306 class="aui-button aui-style aui-dropdown2-trigger" aria-haspopup="true"
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307 aria-owns="clone-url-dropdown-header">
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308 <span class="dropdown-text">HTTPS</span>
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309 </a>
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310 <div id="clone-url-dropdown-header" class="aui-dropdown2 aui-style-default">
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311 <ul class="aui-list-truncate">
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312 <li>
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313 <a href="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
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314
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315 data-command="hg clone https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
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316
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317 class="item-link https">HTTPS
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318 </a>
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319 </li>
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320 <li>
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321 <a href="ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
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322
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323 data-command="hg clone ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
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324
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325 class="item-link ssh">SSH
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326 </a>
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327 </li>
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328 </ul>
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329 </div>
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330 <input type="text" readonly="readonly" value="hg clone https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker">
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331 </div>
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332
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333 <p>Need help cloning? Visit
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334 <a href="https://confluence.atlassian.com/x/cgozDQ" target="_blank">Bitbucket 101</a>.</p>
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335
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336 </div>
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337
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338
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339
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340
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341
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342
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343 <div class="clone-in-sourcetree"
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344 data-https-url="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
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345 data-ssh-url="ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker">
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346 <p><button class="aui-button aui-style aui-button-primary">Clone in SourceTree</button></p>
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347
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348
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349 <p class="windows-text">
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350
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351 <a href="http://www.sourcetreeapp.com/?utm_source=internal&utm_medium=link&utm_campaign=clone_repo_win" target="_blank">SourceTree</a>
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352 is a free Windows client by Atlassian for Git and Subversion.
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353
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354 </p>
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355 <p class="mac-text">
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356
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357 <a href="http://www.sourcetreeapp.com/?utm_source=internal&utm_medium=link&utm_campaign=clone_repo_mac" target="_blank">SourceTree</a>
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358 is a free Mac client by Atlassian for Git, Mercurial, and Subversion.
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359
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360 </p>
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376 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/overview" id="repo-overview-link">Overview</a>
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377 </li>
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380 <li>
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410 Issues
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424 <li>
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425 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/downloads" id="repo-downloads-link">
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426 Downloads
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455 <div>
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456 <p>
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457
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458 Bitbucket is a code hosting site with unlimited public and private
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459 repositories. We're also free for small teams!
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460
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461 </p>
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462 <a class="aui-button aui-button-primary aui-style signup-button" href="/account/signup/">Sign up for free</a>
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463 <span class="close aui-icon aui-icon-small aui-iconfont-close-dialog" title="Dismiss this banner">Close</span>
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464 </div>
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465 </section>
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466
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471 <section id="readme">
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472
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473 <article class="readme file">
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474 <p>Tool wrapper for SearchGUI + PeptideShaker. This tool takes any number
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475 of mgf files and performs X! Tandem and OMSSA searches on these via
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476 SearchGUI and merges the results using PeptideShaker.</p>
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477 <p>For Galaxy-P we are installing this tool via CloudBioLinux
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478 (https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
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479 this fabric script may not be exactly appropriate for your environment
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480 it may serve as a template for how to install this software. In
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481 particular these tools require CLI wrappers to be placed for
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482 PeptideShaker and SearchGUI that can be installed as demostrated in
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483 these fabric functions.</p>
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484 <p>Note: Also SearchGUI requires a version greater than 1.12.2 which
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485 contained several bugs preventing this from working on the
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486 command-line and via Linux.</p>
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487 <p>Also, PeptideShaker may require xvfb to simulate an X environment if
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488 this is installed on a headless server.</p>
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489 <h1 id="markdown-header-obtaining-tools">Obtaining Tools</h1>
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490 <p>Repositories for all Galaxy-P tools can be found at
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491 https:/bitbucket.org/galaxyp/.</p>
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492 <h1 id="markdown-header-contact">Contact</h1>
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493 <p>Please send suggestions for improvements and bug reports to
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494 jmchilton@gmail.com.</p>
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495 <h1 id="markdown-header-license">License</h1>
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496 <p>All Galaxy-P tools are licensed under the Apache License Version 2.0
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497 unless otherwise documented.</p>
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498 <h1 id="markdown-header-tool-versioning">Tool Versioning</h1>
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499 <p>Galaxy-P tools will have versions of the form X.Y.Z. Versions
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500 differing only after the second decimal should be completely
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501 compatible with each other. Breaking changes should result in an
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502 increment of the number before and/or after the first decimal. All
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503 tools of version less than 1.0.0 should be considered beta.</p>
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504 </article>
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505
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506 </section>
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507
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508
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509
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510 <section id="repo-activity">
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511 <h1>
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512 Recent activity
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513 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/rss" class="icon rss">RSS feed fo galaxyp-toolshed-peptideshaker</a>
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514 </h1>
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537 <span class="icon commit"></span>
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538
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539
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540
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541 <a href="/galaxyp"><img alt="galaxyp" src="https://secure.gravatar.com/avatar/655358b258b3fbd64aa5c6f42adade4e?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_team_avatar%2F32%2Fteam_blue.png&s=32" class="avatar avatar32" /></a>
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542
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543
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544 <p>
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545
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546
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547 <a href="/galaxyp">galaxyp</a>
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548
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549 pushed 1 commit to
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550
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551
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552 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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553
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554
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555 </p>
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556 <time datetime="2013-06-19T22:19:56+00:00">16 hours ago</time>
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557
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558 <div class="changeset">
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559 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/80ef7cf0d97a14a59b39f2d7eb683531cc02056a" class="changeset-hash">80ef7cf</a>
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560 -
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561
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562
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563 improved some datatypes
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564
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565
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566 </div>
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567
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568
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569 </article>
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584
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585 </article>
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593 <span class="icon commit"></span>
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594
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595
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596
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597 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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598
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599
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600 <p>
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601
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602
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603 <a href="/jmchilton">John Chilton</a>
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604
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605 pushed 1 commit to
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606
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607
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608 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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609
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610
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611 </p>
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612 <time datetime="2013-06-07T03:03:07+00:00">2013-06-07</time>
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613
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614 <div class="changeset">
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615 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/113acce8b7eea4ed179411f6704ab5a5d8245da8" class="changeset-hash">113acce</a>
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616 -
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617
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618
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619 Ensure unique Experiment/Sample names. Peptideshaker seems to potentially have clean up problem on errors otherwise.
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620
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621
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622 </div>
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623
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624
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625 </article>
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645 <span class="icon commit"></span>
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648
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649 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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650
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651
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652 <p>
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653
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654
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655 <a href="/jmchilton">John Chilton</a>
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656
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657 pushed 1 commit to
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658
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659
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660 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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661
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662
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663 </p>
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664 <time datetime="2013-05-20T15:26:48+00:00">2013-05-20</time>
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665
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666 <div class="changeset">
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667 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/6fa4a7ad242f1ce78db6eaec19099bd1b7f86b2f" class="changeset-hash">6fa4a7a</a>
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668 -
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669
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670
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671 Add script to create a target-decoy database for PeptideShaker - seems very picky about the format of the database.
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672
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673
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674 </div>
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675
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676
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677 </article>
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694
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695
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696 <article class="news-item commit">
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697 <span class="icon commit"></span>
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698
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699
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700
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701 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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702
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703
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704 <p>
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705
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706
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707 <a href="/jmchilton">John Chilton</a>
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708
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709 pushed 2 commits to
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710
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711
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712 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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713
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714
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715 </p>
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716 <time datetime="2013-05-13T18:51:02+00:00">2013-05-13</time>
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717
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718 <div class="changeset">
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719 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/bf3730228118ac8adee5e5fc16f08ad5f9aaaf0e" class="changeset-hash">bf37302</a>
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720 -
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721
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722
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723 Add CPS datatype.
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724
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725
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726 </div>
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727
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728 <div class="changeset">
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729 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/d63d2ed28d002156d5330d29afbf8afc54adfc3b" class="changeset-hash">d63d2ed</a>
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730 -
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731
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732
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733 Improve documentation.
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734
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735
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736 </div>
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737
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738
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739 </article>
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740
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756
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757
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758 <article class="news-item commit">
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759 <span class="icon commit"></span>
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760
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761
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762
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763 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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764
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765
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766 <p>
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767
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768
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769 <a href="/jmchilton">John Chilton</a>
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770
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771 pushed 1 commit to
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772
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773
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774 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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775
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776
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777 </p>
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778 <time datetime="2013-05-10T21:39:19+00:00">2013-05-10</time>
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779
|
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780 <div class="changeset">
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781 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/a76da3b08725332a9dc746b3f4e886d047af2e40" class="changeset-hash">a76da3b</a>
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782 -
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783
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784
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785 Add license and documentation.
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786
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787
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788 </div>
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791 </article>
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810 <article class="news-item commit">
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811 <span class="icon commit"></span>
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814
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815 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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816
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817
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818 <p>
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819
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820
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821 <a href="/jmchilton">John Chilton</a>
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822
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823 pushed 1 commit to
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824
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825
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|
826 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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827
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828
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829 </p>
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830 <time datetime="2013-05-10T21:33:27+00:00">2013-05-10</time>
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831
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832 <div class="changeset">
|
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|
833 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/29ee7c62dfdc24848cc1111500d544c700ca9008" class="changeset-hash">29ee7c6</a>
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|
|
834 -
|
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835
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836
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837 Add sample loc file for toolshed.
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838
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839
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840 </div>
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841
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842
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843 </article>
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861
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862 <article class="news-item commit">
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863 <span class="icon commit"></span>
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864
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865
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866
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867 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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868
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869
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870 <p>
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871
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872
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873 <a href="/jmchilton">John Chilton</a>
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874
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875 pushed 1 commit to
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876
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877
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878 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
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879
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880
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881 </p>
|
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882 <time datetime="2013-04-12T18:58:24+00:00">2013-04-12</time>
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883
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|
884 <div class="changeset">
|
|
|
885 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/8384b7acd805161da0b61203688c61ed0b11b72b" class="changeset-hash">8384b7a</a>
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|
886 -
|
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887
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888
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889 Fix modification handling.
|
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890
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891
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892 </div>
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893
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894
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895 </article>
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896
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912
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913
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914 <article class="news-item commit">
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915 <span class="icon commit"></span>
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916
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917
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918
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919 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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920
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921
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922 <p>
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923
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924
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925 <a href="/jmchilton">John Chilton</a>
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926
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927 pushed 1 commit to
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928
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929
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930 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
|
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931
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932
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|
933 </p>
|
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934 <time datetime="2013-04-11T18:38:44+00:00">2013-04-11</time>
|
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935
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|
936 <div class="changeset">
|
|
|
937 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/735b677030185833e6dee7a38e37a0b8ef49a2fb" class="changeset-hash">735b677</a>
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938 -
|
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939
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940
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941 PeptideShaker modifications need to be all lower case.
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942
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943
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944 </div>
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945
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946
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947 </article>
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948
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964
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965
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966 <article class="news-item commit">
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967 <span class="icon commit"></span>
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968
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969
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970
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971 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
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972
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973
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974 <p>
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975
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976
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|
977 <a href="/jmchilton">John Chilton</a>
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978
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|
979 pushed 2 commits to
|
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980
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981
|
|
|
982 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
|
|
|
983
|
|
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984
|
|
|
985 </p>
|
|
|
986 <time datetime="2013-04-08T19:54:06+00:00">2013-04-08</time>
|
|
|
987
|
|
|
988 <div class="changeset">
|
|
|
989 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/1f4e30851033eb83986c2d793ba894604f9fe1b0" class="changeset-hash">1f4e308</a>
|
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|
990 -
|
|
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991
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992
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993 Implement modifications for peptide_shaker wrapper.
|
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994
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|
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995
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|
|
996 </div>
|
|
|
997
|
|
|
998 <div class="changeset">
|
|
|
999 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/90c86636c57d28ba6f369e0e0d1aa097c46f5d4b" class="changeset-hash">90c8663</a>
|
|
|
1000 -
|
|
|
1001
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1002
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1003 Initial work on building modification list for searchGUI.
|
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1004
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1005
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1006 </div>
|
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1007
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1008
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1009 </article>
|
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1010
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1011
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1012
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1013
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1016
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1017
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1018
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1021
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1022
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1023
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1024
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1025
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1026
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1027
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1028 <article class="news-item commit">
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1029 <span class="icon commit"></span>
|
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1030
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1031
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1032
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|
1033 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&s=32" class="avatar avatar32" /></a>
|
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1034
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1035
|
|
|
1036 <p>
|
|
|
1037
|
|
|
1038
|
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|
1039 <a href="/jmchilton">John Chilton</a>
|
|
|
1040
|
|
|
1041 pushed 1 commit to
|
|
|
1042
|
|
|
1043
|
|
|
1044 <a href="/galaxyp/galaxyp-toolshed-peptideshaker" title="galaxyp/galaxyp-toolshed-peptideshaker">galaxyp/galaxyp-toolshed-peptideshaker</a>
|
|
|
1045
|
|
|
1046
|
|
|
1047 </p>
|
|
|
1048 <time datetime="2013-03-19T19:23:06+00:00">2013-03-19</time>
|
|
|
1049
|
|
|
1050 <div class="changeset">
|
|
|
1051 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/21b540795f0663a4633a53c78d733746a463167d" class="changeset-hash">21b5407</a>
|
|
|
1052 -
|
|
|
1053
|
|
|
1054
|
|
|
1055 Fix label on protein report.
|
|
|
1056
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|
|
1057
|
|
|
1058 </div>
|
|
|
1059
|
|
|
1060
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|
|
1061 </article>
|
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1062
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1063
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1064
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1065
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1066
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1067
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1068 </article>
|
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1069
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1070
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1071
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1072
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1073
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1074 </div>
|
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1075
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1076
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1077
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1078
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1079
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1080
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1081 </section>
|
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|
1082 </div>
|
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1083
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1084 <div class="column">
|
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1085
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1086
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1087
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1088
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|
1089 <section id="repo-stats">
|
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1090
|
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|
1091 <div class="clone-url">
|
|
|
1092 <div class="aui-buttons">
|
|
|
1093 <a href="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
|
|
|
1094 class="aui-button aui-style aui-dropdown2-trigger" aria-haspopup="true"
|
|
|
1095 aria-owns="clone-url-dropdown-overview">
|
|
|
1096 <span class="dropdown-text">HTTPS</span>
|
|
|
1097 </a>
|
|
|
1098 <div id="clone-url-dropdown-overview" class="aui-dropdown2 aui-style-default">
|
|
|
1099 <ul class="aui-list-truncate">
|
|
|
1100 <li>
|
|
|
1101 <a href="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
|
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|
1102
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|
1103 data-command="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
|
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|
1104
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|
1105 class="item-link https">HTTPS
|
|
|
1106 </a>
|
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|
1107 </li>
|
|
|
1108 <li>
|
|
|
1109 <a href="ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
|
|
|
1110
|
|
|
1111 data-command="ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker"
|
|
|
1112
|
|
|
1113 class="item-link ssh">SSH
|
|
|
1114 </a>
|
|
|
1115 </li>
|
|
|
1116 </ul>
|
|
|
1117 </div>
|
|
|
1118 <input type="text" readonly="readonly" value="https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker">
|
|
|
1119 </div>
|
|
|
1120
|
|
|
1121 </div>
|
|
|
1122
|
|
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1123
|
|
|
1124 <ul class="stats">
|
|
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1125
|
|
|
1126 <li class="branches">
|
|
|
1127 <a href="#branches" id="branches-dialog-trigger"
|
|
|
1128 data-url="/api/1.0/repositories/galaxyp/galaxyp-toolshed-peptideshaker/branches-tags"
|
|
|
1129 data-template="branches-overview-template">
|
|
|
1130 <span class="aui-icon aui-icon-large aui-iconfont-devtools-branch"></span>
|
|
|
1131
|
|
|
1132 <span class="value">1</span> Branch
|
|
|
1133
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|
1134 </a>
|
|
|
1135 </li>
|
|
|
1136 <li class="tags">
|
|
|
1137 <a href="#tags" id="tags-dialog-trigger"
|
|
|
1138 data-url="/api/1.0/repositories/galaxyp/galaxyp-toolshed-peptideshaker/branches-tags"
|
|
|
1139 data-template="tags-overview-template">
|
|
|
1140 <span class="aui-icon aui-icon-large aui-iconfont-devtools-tag"></span>
|
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|
1141
|
|
|
1142 <span class="value">1</span> Tag
|
|
|
1143
|
|
|
1144 </a>
|
|
|
1145 </li>
|
|
|
1146 <li class="forks">
|
|
|
1147 <a href="#forks" id="forks-dialog-trigger"
|
|
|
1148 data-url="/api/1.0/repositories/galaxyp/galaxyp-toolshed-peptideshaker/forks"
|
|
|
1149 data-template="forks-overview-template">
|
|
|
1150 <span class="aui-icon aui-icon-large aui-iconfont-devtools-fork"></span>
|
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|
1151
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|
1152 <span class="value">0</span> Forks
|
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|
1153
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|
1154 </a>
|
|
|
1155 </li>
|
|
|
1156
|
|
|
1157 <li class="followers">
|
|
|
1158 <a href="#followers" id="followers-dialog-trigger"
|
|
|
1159 data-url="/api/1.0/repositories/galaxyp/galaxyp-toolshed-peptideshaker/followers"
|
|
|
1160 data-template="watchers-overview-template">
|
|
|
1161 <span class="aui-icon aui-icon-large aui-iconfont-star"></span>
|
|
|
1162
|
|
|
1163 <span class="value">2</span> Watchers
|
|
|
1164
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|
|
1165 </a>
|
|
|
1166 </li>
|
|
|
1167 </ul>
|
|
|
1168
|
|
|
1169 <script id="branches-overview-template" type="text/html">
|
|
|
1170
|
|
|
1171
|
|
|
1172 <div class="tabbed-filter-widget repo-stats-dialog branches" id="branches-dialog">
|
|
|
1173 <div class="tabbed-filter">
|
|
|
1174 <input placeholder="Filter branches" class="filter-box" autosave="branch-dropdown-2238689" type="text">
|
|
|
1175 </div>
|
|
|
1176 <div class="tab-pane active-pane branches" id="branch-list">
|
|
|
1177 <ol class="filter-list[[^branches]] empty[[/branches]]">
|
|
|
1178 <li class="empty-msg">No matching branches</li>
|
|
|
1179 [[#branches]]
|
|
|
1180 <li class="comprev filter-item">
|
|
|
1181 <a href="/galaxyp/galaxyp-toolshed-peptideshaker/commits/branch/[[encodedName]]" title="Browse source of [[name]]">[[name]]</a>
|
|
|
1182 [[^mainbranch]]
|
|
|
1183 <a rel="nofollow" class="compare"
|
|
|
1184 href="/galaxyp/galaxyp-toolshed-peptideshaker/compare/[[encodedName]].."
|
|
|
1185 title="Show changes between [[name]] and the main branch.">Compare</a>
|
|
|
1186 [[/mainbranch]]
|
|
|
1187 </li>
|
|
|
1188 [[/branches]]
|
|
|
1189 </ol>
|
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|
1190 </div>
|
|
|
1191 </div>
|
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|
1192
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|
1193 </script>
|
|
|
1194 <script id="tags-overview-template" type="text/html">
|
|
|
1195
|
|
|
1196
|
|
|
1197 <div class="tabbed-filter-widget repo-stats-dialog tags" id="tags-dialog">
|
|
|
1198 <div class="tabbed-filter">
|
|
|
1199 <input placeholder="Filter tags" class="filter-box" autosave="tag-dropdown-2238689" type="text">
|
|
|
1200 </div>
|
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1275
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1276 <dt>Created</dt>
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1278
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1281 1.4 MB
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1285
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