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comparison macros.xml @ 26:3ef5a7dd1a36 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 6dcfe37e286523588aa2738599af8d3273290f28-dirty
author galaxyp
date Tue, 10 May 2016 06:33:08 -0400
parents 815f93bb3e1b
children 70dade9fb8e3
comparison
equal deleted inserted replaced
25:0986f68fb410 26:3ef5a7dd1a36
24 -mc $missed_cleavages 24 -mc $missed_cleavages
25 -fi $forward_ion 25 -fi $forward_ion
26 -ri $reverse_ion 26 -ri $reverse_ion
27 </token> 27 </token>
28 <token name="@SEARCHGUI_MAJOR_VERSION@">2</token> 28 <token name="@SEARCHGUI_MAJOR_VERSION@">2</token>
29 <token name="@SEARCHGUI_VERSION@">2.1</token> 29 <token name="@SEARCHGUI_VERSION@">2.8</token>
30 <xml name="general_options"> 30 <xml name="general_options">
31 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" 31 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units"
32 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> 32 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions">
33 <option value="1">Parts per million (ppm)</option> 33 <option value="1">Parts per million (ppm)</option>
34 <option value="2">Daltons</option> 34 <option value="2">Daltons</option>
39 help="Provide error value for fragment ions, based on instrument used"/> 39 help="Provide error value for fragment ions, based on instrument used"/>
40 <param name="enzyme" type="select" label="Enzyme" 40 <param name="enzyme" type="select" label="Enzyme"
41 help="Which enzyme was used for protein digest in experiment? In most cases, trypsin is used"> 41 help="Which enzyme was used for protein digest in experiment? In most cases, trypsin is used">
42 <option value="Trypsin">Trypsin</option> 42 <option value="Trypsin">Trypsin</option>
43 <option value="Arg-C">Arg-C</option> 43 <option value="Arg-C">Arg-C</option>
44 <option value="Semi-Arg-C">Semi-Arg-C</option>
44 <option value="CNBr">CNBr</option> 45 <option value="CNBr">CNBr</option>
45 <option value="Chymotrypsin (FYWL)">Chymotrypsin (FYWL)</option> 46 <option value="Chymotrypsin (FYWL)">Chymotrypsin (FYWL)</option>
47 <option value="Semi-Chymotrypsin (FYWL)">Semi-Chymotrypsin (FYWL)</option>
46 <option value="Formic Acid">Formic Acid</option> 48 <option value="Formic Acid">Formic Acid</option>
47 <option value="Lys-C">Lys-C</option> 49 <option value="Lys-C">Lys-C</option>
48 <option value="Lys-C, no P rule">Lys-C, no P rule</option> 50 <option value="Lys-C, no P rule">Lys-C, no P rule</option>
49 <option value="Pepsin A">Pepsin A</option> 51 <option value="Pepsin A">Pepsin A</option>
50 <option value="Trypsin + CNBr">Trypsin + CNBr</option> 52 <option value="Trypsin + CNBr">Trypsin + CNBr</option>