Mercurial > repos > galaxyp > peptideshaker
comparison macros_basic.xml @ 57:da885ca16cb2 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 44a20633e04b2396fad4b568904a257769b2bbc1"
author | galaxyp |
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date | Tue, 16 Mar 2021 15:12:03 +0000 |
parents | 1beff3ddce58 |
children | 07ff622ec007 |
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56:1beff3ddce58 | 57:da885ca16cb2 |
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1 <macros> | 1 <macros> |
2 <xml name="stdio"> | 2 <xml name="stdio"> |
3 <stdio> | 3 <stdio> |
4 <exit_code range="1:" level="fatal" description="Job Failed" /> | 4 <exit_code range="1:" level="fatal" description="Job Failed" /> |
5 <regex match="OutOfMemoryError" level="fatal_oom" description="Out of memory"/> | |
5 <regex match="java.*Exception" level="fatal" description="Java Exception"/> | 6 <regex match="java.*Exception" level="fatal" description="Java Exception"/> |
6 <regex match="Could not reserve enough space for * object heap" level="fatal" description="Out of memory"/> | 7 <regex match="Could not reserve enough space for * object heap" level="fatal_oom" description="Out of memory"/> |
7 <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/> | 8 <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/> |
8 <regex match="PeptideShaker ran out of memory" level="fatal" description="JVM Error"/> | 9 <regex match="PeptideShaker ran out of memory" level="fatal_oom" description="JVM Error"/> |
9 <regex match="CompomicsError" level="fatal" description="Compomics Error"/> | 10 <regex match="CompomicsError" level="fatal" description="Compomics Error"/> |
10 </stdio> | 11 </stdio> |
11 </xml> | 12 </xml> |
12 <token name="@SEARCHGUI_MAJOR_VERSION@">4</token> | 13 <token name="@SEARCHGUI_MAJOR_VERSION@">4</token> |
13 <token name="@SEARCHGUI_VERSION@">4.0.12</token> | 14 <token name="@SEARCHGUI_VERSION@">4.0.22</token> |
14 <token name="@SEARCHGUI_VERSION_SUFFIX@">0</token> | 15 <token name="@SEARCHGUI_VERSION_SUFFIX@">0</token> |
15 <token name="@PEPTIDESHAKER_VERSION@">2.0.9</token> | 16 <token name="@PEPTIDESHAKER_VERSION@">2.0.15</token> |
16 <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">0</token> | 17 <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">0</token> |
17 <xml name="citations"> | 18 <xml name="citations"> |
18 <citations> | 19 <citations> |
19 <citation type="doi">10.1186/1471-2105-12-70</citation> | 20 <citation type="doi">10.1186/1471-2105-12-70</citation> |
20 <citation type="doi">10.1002/pmic.201000595</citation> | 21 <citation type="doi">10.1002/pmic.201000595</citation> |