Mercurial > repos > galaxyp > peptideshaker_0201
changeset 0:a92db19b2daa draft
Uploaded
| author | galaxyp |
|---|---|
| date | Mon, 24 Jun 2013 13:58:39 -0400 |
| parents | |
| children | e837c31e8260 |
| files | README.md tool_dependencies.xml |
| diffstat | 2 files changed, 24 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Mon Jun 24 13:58:39 2013 -0400 @@ -0,0 +1,1 @@ +Contains only a tool_dependencies.xml file fdefining peptideshaker dependency. \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jun 24 13:58:39 2013 -0400 @@ -0,0 +1,23 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="PeptideShaker" version="0.20.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action> + <action type="shell_command">chmod -R o+w resources</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="shell_command">mkdir -p $BIN_DIR</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework. + (https://github.com/jmchilton/peptide-shaker). + </readme> + </package> +</tool_dependency>