Mercurial > repos > galaxyp > proteinpilot

comparison galaxyp-toolshed-proteinpilot @ 2:ebeaa403d9eb

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improved some datatype handling
author galaxyp
date Thu, 20 Jun 2013 10:50:41 -0400
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254 </span>
255
256
257 </a>
258 <h1><a class="repo-link" href="/galaxyp/galaxyp-toolshed-proteinpilot">galaxyp-toolshed-proteinpilot</a></h1>
259 <ul class="repo-metadata clearfix">
260 <li>
261 <a class="user" href="/galaxyp">
262 <span class="aui-icon aui-icon-small aui-iconfont-user">User icon</span>
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306 class="aui-button aui-style aui-dropdown2-trigger" aria-haspopup="true"
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309 </a>
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311 <ul class="aui-list-truncate">
312 <li>
313 <a href="https://bitbucket.org/galaxyp/galaxyp-toolshed-proteinpilot"
314
315 data-command="hg clone https://bitbucket.org/galaxyp/galaxyp-toolshed-proteinpilot"
316
317 class="item-link https">HTTPS
318 </a>
319 </li>
320 <li>
321 <a href="ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-proteinpilot"
322
323 data-command="hg clone ssh://hg@bitbucket.org/galaxyp/galaxyp-toolshed-proteinpilot"
324
325 class="item-link ssh">SSH
326 </a>
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335
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346 <p><button class="aui-button aui-style aui-button-primary">Clone in SourceTree</button></p>
347
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350
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352 is a free Windows client by Atlassian for Git and Subversion.
353
354 </p>
355 <p class="mac-text">
356
357 <a href="http://www.sourcetreeapp.com/?utm_source=internal&amp;utm_medium=link&amp;utm_campaign=clone_repo_mac" target="_blank">SourceTree</a>
358 is a free Mac client by Atlassian for Git, Mercurial, and Subversion.
359
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361 </div>
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368 <div class="clearfix"></div>
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373 <ul class="aui-nav">
374
375 <li class="aui-nav-selected">
376 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/overview" id="repo-overview-link">Overview</a>
377 </li>
378
379
380 <li>
381 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/src" id="repo-source-link">Source</a>
382 </li>
383
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385 <li>
386 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits" id="repo-commits-link">
387 Commits
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389 </li>
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394 Pull requests
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410 Issues
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415 </li>
416 <li id="wiki-tab" class="
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421 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/wiki" id="repo-wiki-link">Wiki</a>
422 </li>
423
424 <li>
425 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/downloads" id="repo-downloads-link">
426 Downloads
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430 </a>
431 </li>
432
433 </ul>
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436 <ul class="aui-nav">
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444
445 <div id="repo-content">
446
447 <div id="repo-overview">
448
449
450
451 <div class="column">
452
453
454 <section class="bb-banner" id="signup-banner">
455 <div>
456 <p>
457
458 Bitbucket is a code hosting site with unlimited public and private
459 repositories. We're also free for small teams!
460
461 </p>
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463 <span class="close aui-icon aui-icon-small aui-iconfont-close-dialog" title="Dismiss this banner">Close</span>
464 </div>
465 </section>
466
467
468
469
470
471 <section id="readme">
472
473 <article class="readme file">
474 <p>TODO: Document this tool repository.</p>
475 <h1 id="markdown-header-obtaining-tools">Obtaining Tools</h1>
476 <p>Repositories for all Galaxy-P tools can be found at
477 https:/bitbucket.org/galaxyp/.</p>
478 <h1 id="markdown-header-contact">Contact</h1>
479 <p>Please send suggestions for improvements and bug reports to
480 jmchilton@gmail.com.</p>
481 <h1 id="markdown-header-license">License</h1>
482 <p>All Galaxy-P tools are licensed under the Apache License Version 2.0
483 unless otherwise documented.</p>
484 <h1 id="markdown-header-tool-versioning">Tool Versioning</h1>
485 <p>Galaxy-P tools will have versions of the form X.Y.Z. Versions
486 differing only after the second decimal should be completely
487 compatible with each other. Breaking changes should result in an
488 increment of the number before and/or after the first decimal. All
489 tools of version less than 1.0.0 should be considered beta.</p>
490 </article>
491
492 </section>
493
494
495
496 <section id="repo-activity">
497 <h1>
498 Recent activity
499 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/rss" class="icon rss">RSS feed fo galaxyp-toolshed-proteinpilot</a>
500 </h1>
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522 <article class="news-item commit">
523 <span class="icon commit"></span>
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527 <a href="/galaxyp"><img alt="galaxyp" src="https://secure.gravatar.com/avatar/655358b258b3fbd64aa5c6f42adade4e?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_team_avatar%2F32%2Fteam_blue.png&amp;s=32" class="avatar avatar32" /></a>
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530 <p>
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533 <a href="/galaxyp">galaxyp</a>
534
535 pushed 1 commit to
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538 <a href="/galaxyp/galaxyp-toolshed-proteinpilot" title="galaxyp/galaxyp-toolshed-proteinpilot">galaxyp/galaxyp-toolshed-proteinpilot</a>
539
540
541 </p>
542 <time datetime="2013-06-20T14:34:36+00:00">16 minutes ago</time>
543
544 <div class="changeset">
545 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits/478c9dfebeb1844401c1f5fcf6a55fefa6796655" class="changeset-hash">478c9df</a>
546 -
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549 improved some datatype handling
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552 </div>
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578 <article class="news-item commit">
579 <span class="icon commit"></span>
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583 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
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586 <p>
587
588
589 <a href="/jmchilton">John Chilton</a>
590
591 pushed 1 commit to
592
593
594 <a href="/galaxyp/galaxyp-toolshed-proteinpilot" title="galaxyp/galaxyp-toolshed-proteinpilot">galaxyp/galaxyp-toolshed-proteinpilot</a>
595
596
597 </p>
598 <time datetime="2013-05-05T19:06:30+00:00">2013-05-05</time>
599
600 <div class="changeset">
601 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits/eeb0664db8240d23a79fc406b6ae7c39f8159291" class="changeset-hash">eeb0664</a>
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605 Add TMT options to protein pilot.
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635 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
636
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638 <p>
639
640
641 <a href="/jmchilton">John Chilton</a>
642
643 pushed 1 commit to
644
645
646 <a href="/galaxyp/galaxyp-toolshed-proteinpilot" title="galaxyp/galaxyp-toolshed-proteinpilot">galaxyp/galaxyp-toolshed-proteinpilot</a>
647
648
649 </p>
650 <time datetime="2013-04-22T15:57:02+00:00">2013-04-22</time>
651
652 <div class="changeset">
653 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits/3d9ab1d73205383c046a753bf779f707ae616d57" class="changeset-hash">3d9ab1d</a>
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657 Fix name versus display_name property access.
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685
686
687 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
688
689
690 <p>
691
692
693 <a href="/jmchilton">John Chilton</a>
694
695 pushed 1 commit to
696
697
698 <a href="/galaxyp/galaxyp-toolshed-proteinpilot" title="galaxyp/galaxyp-toolshed-proteinpilot">galaxyp/galaxyp-toolshed-proteinpilot</a>
699
700
701 </p>
702 <time datetime="2013-04-16T04:24:45+00:00">2013-04-16</time>
703
704 <div class="changeset">
705 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits/51a040d6310f38d2fb138acf6fb0a945a4532844" class="changeset-hash">51a040d</a>
706 -
707
708
709 Use config file to store input names and paths. This results in dramatically smaller command-lines (worry we are hitting the upperlimit of what Windows allows).
710
711
712 </div>
713
714
715 </article>
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731 </article>
732
733
734
735
736 <article class="news-item commit">
737 <span class="icon commit"></span>
738
739
740
741 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
742
743
744 <p>
745 Commits by
746
747 <a href="/jmchilton">John Chilton</a>
748
749 were pushed to
750
751
752 <a href="/galaxyp/galaxyp-toolshed-proteinpilot" title="galaxyp/galaxyp-toolshed-proteinpilot">galaxyp/galaxyp-toolshed-proteinpilot</a>
753
754
755 </p>
756 <time datetime="2013-02-08T18:44:07+00:00">2013-02-08</time>
757 <div class="changeset">
758 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits/83f810baa907de50e87aa2efde99e088" class="changeset-hash">83f810b</a>
759 -
760
761 Add None as digestion option.
762
763 </div>
764
765
766
767
768
769
770
771
772
773
774
775
776 <div class="changeset">
777 <a href="/galaxyp/galaxyp-toolshed-proteinpilot/commits/d2a889605d117c8bca26124d372841c1" class="changeset-hash">d2a8896</a>
778 -
779
780 Initial commit.
781
782 </div>
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789
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795 </article>
796
797
798
799
800
801
802
803 <article class="news-item create">
804 <span class="icon create"></span>
805
806
807
808 <a href="/jmchilton"><img alt="John Chilton" src="https://secure.gravatar.com/avatar/86cbb595c758989c14ae715c44588998?d=https%3A%2F%2Fd3oaxc4q5k2d6q.cloudfront.net%2Fm%2F968d9745b7be%2Fimg%2Fdefault_avatar%2F32%2Fuser_blue.png&amp;s=32" class="avatar avatar32" /></a>
809
810
811
812 <p>
813
814
815 <a href="/jmchilton">John Chilton</a>
816
817 created
818
819
820 <a href="/galaxyp/galaxyp-toolshed-proteinpilot" title="galaxyp/galaxyp-toolshed-proteinpilot">galaxyp/galaxyp-toolshed-proteinpilot</a>
821
822 </p>
823
824
825 <time datetime="2012-08-13T18:27:01+00:00">2012-08-13</time>
826
827
828
829
830
831
832
833 </article>
834
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1038 <dt>Last updated</dt>
1039 <dd><time datetime="2013-06-20T16:34:36.195974">16 minutes ago</time></dd>
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1041 <dt>Created</dt>
1042 <dd><time datetime="2012-08-13T20:27:01.972536">2012-08-13</time></dd>
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1044 <dt>Size</dt>
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1049 href="/galaxyp/galaxyp-toolshed-proteinpilot/get/478c9dfebeb1.zip"
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