changeset 0:a06f14681ead draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 13:01:45 -0500
parents
children aa891200f859
files repository_dependencies.xml
diffstat 1 files changed, 141 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Wed Mar 01 13:01:45 2017 -0500
@@ -0,0 +1,141 @@
+<?xml version="1.0"?>
+<repositories description="OpenMS Suite for LC/MS data management and analyses">  <repository changeset_revision="566046627ebf" name="openms_openswathrtnormalizer" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="53f456ded5a6" name="openms_decoydatabase" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d2b1258ee673" name="openms_metabolitespectralmatcher" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9af6146f168b" name="openms_idripper" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4fba18bcca36" name="openms_inspectadapter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0ca1787a59a7" name="openms_fidoadapter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c7cdeb51c3b2" name="openms_mapnormalizer" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8b692fe8001b" name="openms_featurefinderisotopewavelet" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="800cfbb18f30" name="openms_compnovo" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c1f46b63e8c8" name="openms_openswathfeaturexmltotsv" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="edc5db51452d" name="openms_consensusmapnormalizer" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="56c8cc246637" name="openms_ptpredict" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="45a9649b4891" name="openms_precursorionselector" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0cdc3e405e3c" name="openms_eicextractor" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2602a6da5ad3" name="openms_featurefindermetabo" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="526f8ef4d75b" name="openms_converttsvtotraml" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5ae104d0da6e" name="openms_peakpickerhires" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2b7b288f2d2a" name="openms_noisefiltersgolay" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="916f41a35640" name="openms_isobaricanalyzer" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c5136f02a0fa" name="openms_openswathassaygenerator" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="95b2f6a72817" name="openms_featurelinkerunlabeledqt" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="70943f76cea6" name="openms_openswathconfidencescoring" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="bea4646ed591" name="openms_idfileconverter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="44d9229ac23d" name="openms_ffeval" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="5759f19a8886" name="openms_qccalculator" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="15583b6b555d" name="openms_qcexporter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="080af4213d0b" name="openms_spectrafiltersqrtmower" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="2372910eff0d" name="openms_idfilter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="f9bc00c0ebed" name="openms_xtandemadapter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b2a0d4fa0282" name="openms_qcmerger" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d05c7c810dd8" name="openms_tmtanalyzer" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="2092c98a7c43" name="openms_qcshrinker" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e37289d08990" name="openms_highresprecursormasscorrector" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="2fdd110666cb" name="openms_masstraceextractor" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f9ead04f81ef" name="openms_openswathanalyzer" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="086cb9f95fef" name="openms_featurelinkerunlabeled" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="dbaa707ce149" name="openms_idsplitter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b1af731ae341" name="openms_openswathdiaprescoring" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
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+  <repository changeset_revision="8d5dc126d30b" name="openms_dtaextractor" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2edc51d55cea" name="openms_qcimporter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b79427a7cd3d" name="openms_mrmmapper" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ca71813dee8a" name="openms_masscalculator" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a5e996f13660" name="openms_fileinfo" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fc7bbbcd8194" name="openms_topperc" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4768c361b11f" name="openms_baselinefilter" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" />
+</repositories>