Mercurial > repos > galaxyp > thermo_raw_file_converter

comparison test-data/really_small.indexed_mzML @ 10:b9b385097f13 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/ThermoRawFileParser commit 0f6ab8b5647a33b2b051d7aa808ef42546436b23"
author galaxyp
date Sat, 10 Apr 2021 15:56:48 +0000
parents 92ac8e086317
children 19e45916daf9
comparison
equal deleted inserted replaced
9:92ac8e086317 10:b9b385097f13
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <indexedmzML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" xmlns="http://psi.hupo.org/ms/mzml"> 2 <indexedmzML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" xmlns="http://psi.hupo.org/ms/mzml">
3 <mzML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" version="1.1.0" id="really_small"> 3 <mzML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" version="1.1.0" id="really_small">
4 <cvList count="2"> 4 <cvList count="2">
5 <cv id="MS" fullName="Mass spectrometry ontology" version="4.1.41" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" /> 5 <cv id="MS" fullName="Mass spectrometry ontology" version="4.1.48" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" />
6 <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" /> 6 <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" />
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" value="" name="MS1 spectrum" /> 10 <cvParam cvRef="MS" accession="MS:1000579" value="" name="MS1 spectrum" />
24 <cvParam cvRef="MS" accession="MS:1002416" value="" name="Orbitrap Fusion" /> 24 <cvParam cvRef="MS" accession="MS:1002416" value="" name="Orbitrap Fusion" />
25 <cvParam cvRef="MS" accession="MS:1000529" value="FSN10188" name="instrument serial number" /> 25 <cvParam cvRef="MS" accession="MS:1000529" value="FSN10188" name="instrument serial number" />
26 </referenceableParamGroup> 26 </referenceableParamGroup>
27 </referenceableParamGroupList> 27 </referenceableParamGroupList>
28 <softwareList count="1"> 28 <softwareList count="1">
29 <software id="ThermoRawFileParser" version="1.3.2"> 29 <software id="ThermoRawFileParser" version="1.3.3">
30 <cvParam cvRef="MS" accession="MS:1000799" value="ThermoRawFileParser" name="custom unreleased software tool" /> 30 <cvParam cvRef="MS" accession="MS:1003145" name="ThermoRawFileParser" />
31 </software> 31 </software>
32 </softwareList> 32 </softwareList>
33 <instrumentConfigurationList count="1"> 33 <instrumentConfigurationList count="1">
34 <instrumentConfiguration id="IC1"> 34 <instrumentConfiguration id="IC1">
35 <referenceableParamGroupRef ref="commonInstrumentParams" /> 35 <referenceableParamGroupRef ref="commonInstrumentParams" />
2693 </chromatogramList> 2693 </chromatogramList>
2694 </run> 2694 </run>
2695 </mzML> 2695 </mzML>
2696 <indexList count="2"> 2696 <indexList count="2">
2697 <index name="spectrum"> 2697 <index name="spectrum">
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2765 </index> 2765 </index>
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2768 </index> 2768 </index>
2769 </indexList> 2769 </indexList>
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2772 </indexedmzML> 2772 </indexedmzML>