Mercurial > repos > galaxyp > unipept
comparison unipept.py @ 8:7863f1abcdda draft
planemo upload for repository https://unipept.ugent.be/apidocs commit 8b14b02c5b11232c0c2cc278e3ac492455f2e0a5
| author | galaxyp |
|---|---|
| date | Sat, 02 Jul 2022 13:46:38 +0000 |
| parents | 75b3b3d0adbf |
| children |
comparison
equal
deleted
inserted
replaced
| 7:75b3b3d0adbf | 8:7863f1abcdda |
|---|---|
| 484 parser.add_option('-I', '--ipr_tsv', dest='ipr_tsv', default=None, help='Output file path for InterPro TAB-separated-values (.tsv) formatted results') | 484 parser.add_option('-I', '--ipr_tsv', dest='ipr_tsv', default=None, help='Output file path for InterPro TAB-separated-values (.tsv) formatted results') |
| 485 parser.add_option('-L', '--lineage_tsv', dest='lineage_tsv', default=None, help='Output file path for Lineage TAB-separated-values (.tsv) formatted results') | 485 parser.add_option('-L', '--lineage_tsv', dest='lineage_tsv', default=None, help='Output file path for Lineage TAB-separated-values (.tsv) formatted results') |
| 486 parser.add_option('-T', '--tsv', dest='tsv', default=None, help='Output file path for TAB-separated-values (.tsv) formatted results') | 486 parser.add_option('-T', '--tsv', dest='tsv', default=None, help='Output file path for TAB-separated-values (.tsv) formatted results') |
| 487 parser.add_option('-C', '--csv', dest='csv', default=None, help='Output file path for Comma-separated-values (.csv) formatted results') | 487 parser.add_option('-C', '--csv', dest='csv', default=None, help='Output file path for Comma-separated-values (.csv) formatted results') |
| 488 parser.add_option('-U', '--unmatched', dest='unmatched', default=None, help='Output file path for peptide with no matches') | 488 parser.add_option('-U', '--unmatched', dest='unmatched', default=None, help='Output file path for peptide with no matches') |
| 489 parser.add_option('-u', '--url', dest='url', default='http://api.unipept.ugent.be/api/v1/', help='unipept url http://api.unipept.ugent.be/api/v1/') | 489 parser.add_option('-u', '--url', dest='url', default='https://api.unipept.ugent.be/api/v1/', help='unipept url https://api.unipept.ugent.be/api/v1/') |
| 490 parser.add_option('-P', '--peptide_match', dest='peptide_match', choices=['best', 'full', 'report'], default='best', help='Match whole peptide') | 490 parser.add_option('-P', '--peptide_match', dest='peptide_match', choices=['best', 'full', 'report'], default='best', help='Match whole peptide') |
| 491 parser.add_option('--unmatched_aa', dest='unmatched_aa', default=None, help='Show unmatched AA in peptide as') | 491 parser.add_option('--unmatched_aa', dest='unmatched_aa', default=None, help='Show unmatched AA in peptide as') |
| 492 # debug | 492 # debug |
| 493 parser.add_option('-g', '--get', dest='get', action='store_true', default=False, help='Use GET instead of POST') | 493 parser.add_option('-g', '--get', dest='get', action='store_true', default=False, help='Use GET instead of POST') |
| 494 parser.add_option('-d', '--debug', dest='debug', action='store_true', default=False, help='Turning on debugging') | 494 parser.add_option('-d', '--debug', dest='debug', action='store_true', default=False, help='Turning on debugging') |