Mercurial > repos > gandres > vcftools_filter_stats_diversity
view VCFToolsStats/.svn/text-base/vcfToolsStats.sh.svn-base @ 11:f494c8d22725 draft default tip
planemo upload
author | gandres |
---|---|
date | Wed, 15 Jun 2016 09:40:02 -0400 |
parents | ac7c9e40d601 |
children |
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#!/bin/bash tool_path=$(dirname $0) filein=$1 fileout_label=$2 fileout_annot=$3 fileout_het=$4 fileout_imiss=$5 fileout_sum=$6 filelog=$7 perl $tool_path/VCFToolsStats.pl --input $filein --out $fileout_label cp $fileout_label.annotation $fileout_annot ; rm $fileout_label.annotation cp $fileout_label.het $fileout_het ; rm $fileout_label.het cp $fileout_label.imiss $fileout_imiss ; rm $fileout_label.imiss cp $fileout_label.TsTv.summary $fileout_sum ; rm $fileout_label.TsTv.summary cp vcftools.log $filelog rm vcftools.log