Mercurial > repos > gandres > vcftools_filter_stats_diversity
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planemo upload
author | gandres |
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date | Wed, 15 Jun 2016 09:40:02 -0400 |
parents | ac7c9e40d601 |
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VCFtools - v0.1.12b (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat --het --out vcf_stats --remove-filtered-all After filtering, kept 1 out of 1 Individuals Outputting Individual Heterozygosity Individual Heterozygosity: Only using biallelic SNPs. After filtering, kept 4813 out of a possible 4955 Sites Run Time = 0.00 seconds VCFtools - v0.1.12b (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat --out vcf_stats --TsTv-summary --remove-filtered-all After filtering, kept 1 out of 1 Individuals Outputting Ts/Tv summary Ts/Tv ratio: 1.883 After filtering, kept 4813 out of a possible 4955 Sites Run Time = 0.00 seconds VCFtools - v0.1.12b (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --vcf /w/galaxy/galaxy4gwen/galaxy-dist/database/files/000/dataset_21.dat --missing-indv --out vcf_stats --remove-filtered-all After filtering, kept 1 out of 1 Individuals Outputting Individual Missingness After filtering, kept 4813 out of a possible 4955 Sites Run Time = 0.00 seconds