Mercurial > repos > gandres > vcftools_filter_stats_diversity
changeset 1:0f67ed444d47 draft
Uploaded
| author | gandres |
|---|---|
| date | Thu, 02 Jul 2015 11:07:45 -0400 |
| parents | 3b1436a9a6e5 |
| children | ac7c9e40d601 |
| files | vcftools_main/VCFToolFilter/vcfToolsFilter.xml vcftools_main/VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml vcftools_main/VCFToolsStats/vcfToolsStats.xml vcftools_main/tool_dependencies.xml |
| diffstat | 4 files changed, 16 insertions(+), 13 deletions(-) [+] |
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--- a/vcftools_main/VCFToolFilter/vcfToolsFilter.xml Thu Jul 02 05:21:40 2015 -0400 +++ b/vcftools_main/VCFToolFilter/vcfToolsFilter.xml Thu Jul 02 11:07:45 2015 -0400 @@ -110,10 +110,9 @@ .. class:: infomark -**Authors** Dereeper Alexis +**Authors** Adam Auton, Petr Danecek and Anthony Marcketta (C++ Module) : .. _VCFtools: http://vcftools.sourceforge.net - | Dereeper et al. 2015 in prep. - + | ** Please cite ** "The Variant Call Format and VCFtools", Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, ** Bioinformatics **, 2011 .. class:: infomark @@ -135,7 +134,9 @@ Description ----------- - Filter VCF file + | Filter VCF file + | For further informations on VCFtools, please visite the VCFtools website. + | .. _VCFtools: http://vcftools.sourceforge.net ----------------- Workflow position
--- a/vcftools_main/VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml Thu Jul 02 05:21:40 2015 -0400 +++ b/vcftools_main/VCFToolsSlidingWindow/vcfToolsSlidingWindow.xml Thu Jul 02 11:07:45 2015 -0400 @@ -62,10 +62,9 @@ .. class:: infomark -**Authors** Dereeper Alexis +**Authors** Adam Auton, Petr Danecek and Anthony Marcketta (C++ Module) : .. _VCFtools: http://vcftools.sourceforge.net - | Dereeper et al. 2015 in prep. - + | ** Please cite ** "The Variant Call Format and VCFtools", Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, ** Bioinformatics **, 2011 .. class:: infomark @@ -86,7 +85,9 @@ Description ----------- - Compute statistics on VCF file + | Compute statistics on VCF file + | For further informations on VCFtools, please visite the VCFtools website. + | .. _VCFtools: http://vcftools.sourceforge.net ----------------- Workflow position
--- a/vcftools_main/VCFToolsStats/vcfToolsStats.xml Thu Jul 02 05:21:40 2015 -0400 +++ b/vcftools_main/VCFToolsStats/vcfToolsStats.xml Thu Jul 02 11:07:45 2015 -0400 @@ -60,10 +60,9 @@ .. class:: infomark -**Authors** Dereeper Alexis +**Authors** Adam Auton, Petr Danecek and Anthony Marcketta (C++ Module) : .. _VCFtools: http://vcftools.sourceforge.net - | Dereeper et al. 2015 in prep. - + | ** Please cite ** "The Variant Call Format and VCFtools", Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, ** Bioinformatics **, 2011 .. class:: infomark @@ -84,7 +83,9 @@ Description ----------- - Compute statistics on VCF file + | Compute statistics on VCF file + | For further informations on VCFtools, please visite the VCFtools website. + | .. _VCFtools: http://vcftools.sourceforge.net ----------------- Workflow position
--- a/vcftools_main/tool_dependencies.xml Thu Jul 02 05:21:40 2015 -0400 +++ b/vcftools_main/tool_dependencies.xml Thu Jul 02 11:07:45 2015 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="vcftools" version="0.1.12b"> - <repository changeset_revision="a655cb1dfc58" name="package_vcftools_0_1_12b" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu/" /> + <repository changeset_revision="a655cb1dfc58" name="package_vcftools_0_1_12b" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu/" /> </package> </tool_dependency>