comparison WebServiceToolWorkflow/workflowclients/client_5.xml~ @ 0:d5cd409b8a18 default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository

0:d5cd409b8a18

<tool id="client_5" name="getDDBJEntry    ">
  <description> Client for method: getDDBJEntry , Web service: http://cs.uga.edu/~ganjoo/galaxy/DDBJGetEntry.wadl </description>
  <command interpreter="python">
  	client_1.py
	#if $cond_source.optional_param_source=="no":
  	$output
	http://www.xml.nig.ac.jp/rest/Invoke
	service
	 #if $source0.source0_source=="user":
	 $source0.user_param0
	 #else:
	 $source0.cached_param0
	 #end if
	method
	 #if $source1.source1_source=="user":
	 $source1.user_param1
	 #else:
	 $source1.cached_param1
	 #end if
	accession
	 #if $source2.source2_source=="user":
	 $source2.user_param2
	 #else:
	 $source2.cached_param2
	 #end if
   	#else:
  	$output
	http://www.xml.nig.ac.jp/rest/Invoke
	service
	 #if $source0.source0_source=="user":
	 $source0.user_param0
	 #else:
	 $source0.cached_param0
	 #end if
	method
	 #if $source1.source1_source=="user":
	 $source1.user_param1
	 #else:
	 $source1.cached_param1
	 #end if
	accession
	 #if $source2.source2_source=="user":
	 $source2.user_param2
	 #else:
	 fileInput
	 $source2.cached_param2
	 #end if
   	#end if
</command>
  <inputs>
<conditional name="source0">
    <param name="source0_source" type="select" label="Service to be invoked  Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
    <param name="user_param0" type="select" label="Select Service to be invoked " help="see tip below">
      <option value="GetEntry" >GetEntry</option>
     </param> 
 </when>
 <when value="cached">
    <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter Service to be invoked "/> 
 </when></conditional><conditional name="source1">
    <param name="source1_source" type="select" label="Method to be used Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
    <param name="user_param1" type="select" label="Select Method to be used" help="see tip below">
      <option value="getDDBJEntry" selected="true">getDDBJEntry</option>
     </param> 
 </when>
 <when value="cached">
    <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter Method to be used"/> 
 </when></conditional><conditional name="source2">
    <param name="source2_source" type="select" label="DDBJ accession number Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param2"  type="text" label="Enter DDBJ accession number" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param2" type="data" format="tabular" label="Choose the step from which to get the parameter DDBJ accession number"/> 
 </when></conditional> 
 
  <conditional name="cond_source">
  <param name="optional_param_source" type="select" label="Display Additional Parameters"> 
 <option value="no" selected="true">no</option> 
 <option value="yes">yes</option> 
 </param> 
    <when value="no"> 
     </when>
    <when value="yes"> 
 </when>
 </conditional>
</inputs>
  <outputs>
    <data format="tabular" name="output" />
  </outputs>
  <help>

.. class:: infomark

**TIP:** Service to be invoked  type is xsd:string

.. class:: infomark

**TIP:** Method to be used type is xsd:string

.. class:: infomark

**TIP:** DDBJ accession number type is xsd:string
  </help>
</tool>