diff WebServiceToolWorkflow/workflowclients/client_5.xml~ @ 0:d5cd409b8a18 default tip

Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/WebServiceToolWorkflow/workflowclients/client_5.xml~	Tue Jun 07 18:00:50 2011 -0400
@@ -0,0 +1,115 @@
+<tool id="client_5" name="getDDBJEntry    ">
+  <description> Client for method: getDDBJEntry , Web service: http://cs.uga.edu/~ganjoo/galaxy/DDBJGetEntry.wadl </description>
+  <command interpreter="python">
+  	client_1.py
+	#if $cond_source.optional_param_source=="no":
+  	$output
+	http://www.xml.nig.ac.jp/rest/Invoke
+	service
+	 #if $source0.source0_source=="user":
+	 $source0.user_param0
+	 #else:
+	 $source0.cached_param0
+	 #end if
+	method
+	 #if $source1.source1_source=="user":
+	 $source1.user_param1
+	 #else:
+	 $source1.cached_param1
+	 #end if
+	accession
+	 #if $source2.source2_source=="user":
+	 $source2.user_param2
+	 #else:
+	 $source2.cached_param2
+	 #end if
+   	#else:
+  	$output
+	http://www.xml.nig.ac.jp/rest/Invoke
+	service
+	 #if $source0.source0_source=="user":
+	 $source0.user_param0
+	 #else:
+	 $source0.cached_param0
+	 #end if
+	method
+	 #if $source1.source1_source=="user":
+	 $source1.user_param1
+	 #else:
+	 $source1.cached_param1
+	 #end if
+	accession
+	 #if $source2.source2_source=="user":
+	 $source2.user_param2
+	 #else:
+	 fileInput
+	 $source2.cached_param2
+	 #end if
+   	#end if
+</command>
+  <inputs>
+<conditional name="source0">
+    <param name="source0_source" type="select" label="Service to be invoked  Source"> 
+      <option value="cached" selected="true">Param value will be taken from previous step</option> 
+      <option value="user">User will enter the param value</option> 
+    </param>
+    <when value="user">
+    <param name="user_param0" type="select" label="Select Service to be invoked " help="see tip below">
+      <option value="GetEntry" >GetEntry</option>
+     </param> 
+ </when>
+ <when value="cached">
+    <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter Service to be invoked "/> 
+ </when></conditional><conditional name="source1">
+    <param name="source1_source" type="select" label="Method to be used Source"> 
+      <option value="cached" selected="true">Param value will be taken from previous step</option> 
+      <option value="user">User will enter the param value</option> 
+    </param>
+    <when value="user">
+    <param name="user_param1" type="select" label="Select Method to be used" help="see tip below">
+      <option value="getDDBJEntry" selected="true">getDDBJEntry</option>
+     </param> 
+ </when>
+ <when value="cached">
+    <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter Method to be used"/> 
+ </when></conditional><conditional name="source2">
+    <param name="source2_source" type="select" label="DDBJ accession number Source"> 
+      <option value="cached" selected="true">Param value will be taken from previous step</option> 
+      <option value="user">User will enter the param value</option> 
+    </param>
+    <when value="user">
+      <param format="text" size = "150" name = "user_param2"  type="text" label="Enter DDBJ accession number" help="see tip below" />
+ </when>
+ <when value="cached">
+    <param name = "cached_param2" type="data" format="tabular" label="Choose the step from which to get the parameter DDBJ accession number"/> 
+ </when></conditional> 
+ 
+  <conditional name="cond_source">
+  <param name="optional_param_source" type="select" label="Display Additional Parameters"> 
+ <option value="no" selected="true">no</option> 
+ <option value="yes">yes</option> 
+ </param> 
+    <when value="no"> 
+     </when>
+    <when value="yes"> 
+ </when>
+ </conditional>
+</inputs>
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+  <help>
+
+.. class:: infomark
+
+**TIP:** Service to be invoked  type is xsd:string
+
+.. class:: infomark
+
+**TIP:** Method to be used type is xsd:string
+
+.. class:: infomark
+
+**TIP:** DDBJ accession number type is xsd:string
+  </help>
+</tool>