Mercurial > repos > gbcs-embl-heidelberg > je_markdupes
annotate je @ 2:f6bc74863c1c draft
planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 62411561ae3bc65ea8762d27ec79a7d912503e5b
| author | gbcs-embl-heidelberg |
|---|---|
| date | Wed, 07 Dec 2016 11:57:09 -0500 |
| parents | c6afeeade4f2 |
| children | 4ccf1406832d |
| rev | line source |
|---|---|
| 0 | 1 #!/bin/sh |
| 2 # Wrapper around je_1.0_bundle.jar | |
| 3 | |
| 4 # where are we stored ? | |
| 5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | |
| 6 # echo $DIR | |
| 7 # path to jar file to execute, this jar is supposed to be in the same dir as this script | |
| 8 JAR_FILE=$DIR"/je_1.0_bundle.jar" | |
| 9 | |
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c6afeeade4f2
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
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10 # set default _JAVA_OPTIONS |
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c6afeeade4f2
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
0
diff
changeset
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11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'} |
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c6afeeade4f2
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
0
diff
changeset
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12 export _JAVA_OPTIONS |
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c6afeeade4f2
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
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diff
changeset
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13 |
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c6afeeade4f2
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
0
diff
changeset
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14 # uncomment to change logging level using your own log4j.xml found in $DIR file |
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c6afeeade4f2
use _JAVA_OPTIONS to set default memory limit
gbcs-embl-heidelberg
parents:
0
diff
changeset
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15 # OPTS="-Dlog4j.configuration=file:$DIR/log4j.xml" |
| 0 | 16 |
| 17 java $OPTS -jar $JAR_FILE "$@" | |
| 18 exit $? |