Mercurial > repos > gbcs-embl-heidelberg > je_markdupes

view je @ 2:f6bc74863c1c draft

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planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit 62411561ae3bc65ea8762d27ec79a7d912503e5b
author gbcs-embl-heidelberg
date Wed, 07 Dec 2016 11:57:09 -0500
parents c6afeeade4f2
children 4ccf1406832d
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#!/bin/sh
# Wrapper around je_1.0_bundle.jar

# where are we stored ?
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
# echo $DIR
# path to jar file to execute, this jar is supposed to be in the same dir as this script
JAR_FILE=$DIR"/je_1.0_bundle.jar"

# set default _JAVA_OPTIONS
_JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'}
export _JAVA_OPTIONS

# uncomment to change logging level using your own log4j.xml found in $DIR file
# OPTS="-Dlog4j.configuration=file:$DIR/log4j.xml"

java $OPTS -jar $JAR_FILE "$@"
exit $?