annotate gmql_operators_merge_union_diff.xml @ 0:a80c93182db3 draft default tip

planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
author geco-team
date Tue, 26 Jun 2018 09:08:06 -0400
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a80c93182db3 planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
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1 <macros>
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2 <import>gmql_queries_macros.xml</import>
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3 <xml name="merge">
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4 <expand macro="input_var" name="input_var" label="Input Dataset" optional="false" />
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5 <expand macro="output_var" />
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6 <section name="groupby" title="Group Samples" expanded="true"
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7 help="Grouping metadata attributes can be specified: the samples are then partitioned in groups,
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8 each with a distinct value of the grouping metadata attributes, and the MERGE operation is applied to each
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9 group separately, yielding to one sample in the result dataset for each group. Samples without the grouping
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10 metadata attributes are disregarded">
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11 <repeat name="group_meta_atts" min="0" title="Metadata Attribute">
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12 <expand macro="metajoin_attribute" name="j_att" optional="true" >
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13 <expand macro="metajoin_options" />
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14 </expand>
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15 </repeat>
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16 </section>
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17 <expand macro="materialize_stm" />
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18 </xml>
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19 <xml name="union">
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20 <expand macro="input_var" name="input_var_first" label="First Dataset to be unified" optional="false" />
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21 <expand macro="input_var" name="input_var_second" label="Second Dataset to be unified" optional="false" />
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22 <expand macro="output_var" />
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23 <expand macro="materialize_stm" />
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24 </xml>
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25 <xml name="difference">
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26 <param name="input_var_reference" label="Reference Dataset" type="text"
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27 help="It is he dataset which is copied in the output and from which regions of DS neg are “subtracted”.
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28 Must be a dataset variable already defined as output of a previous operation.">
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29 <expand macro="text_val" />
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30 </param>
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31 <param name="input_var_negative" label="Dataset to subtract from Reference" type="text"
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32 help="If any reference region is found to have intersection with a region in this dataset, it is removed from
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33 the output dataset. Must be a dataset variable already defined as output of a previous operation.">
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34 <expand macro="text_val" />
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35 </param>
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36 <param name="exact_flag" label="Exact matching?" type="boolean" help="If selected, regions are not kept in
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37 the result only if they exactly matches regions in the reference dataset." />
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38 <section name="joinby" title="Joinby Conditions" expanded="true"
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39 help="If attributes are specified, only samples that have the same value for each attributeare considered
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40 when performing the DIFFERENCE.">
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41 <repeat name="group_meta_atts" min="0" title="Metadata Attribute">
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42 <expand macro="metajoin_attribute" name="j_att" optional="true" >
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43 <expand macro="metajoin_options" />
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44 </expand>
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45 </repeat>
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46 </section>
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47 <expand macro="output_var" />
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48 <expand macro="materialize_stm" />
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49 </xml>
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50 </macros>