Mercurial > repos > geco-team > gmql_queries_composer
diff gmql_operators_merge_union_diff.xml @ 0:a80c93182db3 draft default tip
planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
author | geco-team |
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date | Tue, 26 Jun 2018 09:08:06 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gmql_operators_merge_union_diff.xml Tue Jun 26 09:08:06 2018 -0400 @@ -0,0 +1,50 @@ +<macros> + <import>gmql_queries_macros.xml</import> + <xml name="merge"> + <expand macro="input_var" name="input_var" label="Input Dataset" optional="false" /> + <expand macro="output_var" /> + <section name="groupby" title="Group Samples" expanded="true" + help="Grouping metadata attributes can be specified: the samples are then partitioned in groups, + each with a distinct value of the grouping metadata attributes, and the MERGE operation is applied to each + group separately, yielding to one sample in the result dataset for each group. Samples without the grouping + metadata attributes are disregarded"> + <repeat name="group_meta_atts" min="0" title="Metadata Attribute"> + <expand macro="metajoin_attribute" name="j_att" optional="true" > + <expand macro="metajoin_options" /> + </expand> + </repeat> + </section> + <expand macro="materialize_stm" /> + </xml> + <xml name="union"> + <expand macro="input_var" name="input_var_first" label="First Dataset to be unified" optional="false" /> + <expand macro="input_var" name="input_var_second" label="Second Dataset to be unified" optional="false" /> + <expand macro="output_var" /> + <expand macro="materialize_stm" /> + </xml> + <xml name="difference"> + <param name="input_var_reference" label="Reference Dataset" type="text" + help="It is he dataset which is copied in the output and from which regions of DS neg are “subtracted”. + Must be a dataset variable already defined as output of a previous operation."> + <expand macro="text_val" /> + </param> + <param name="input_var_negative" label="Dataset to subtract from Reference" type="text" + help="If any reference region is found to have intersection with a region in this dataset, it is removed from + the output dataset. Must be a dataset variable already defined as output of a previous operation."> + <expand macro="text_val" /> + </param> + <param name="exact_flag" label="Exact matching?" type="boolean" help="If selected, regions are not kept in + the result only if they exactly matches regions in the reference dataset." /> + <section name="joinby" title="Joinby Conditions" expanded="true" + help="If attributes are specified, only samples that have the same value for each attributeare considered + when performing the DIFFERENCE."> + <repeat name="group_meta_atts" min="0" title="Metadata Attribute"> + <expand macro="metajoin_attribute" name="j_att" optional="true" > + <expand macro="metajoin_options" /> + </expand> + </repeat> + </section> + <expand macro="output_var" /> + <expand macro="materialize_stm" /> + </xml> +</macros> \ No newline at end of file