Mercurial > repos > geco-team > gmql_queries_editor

annotate test-data/TG/S_00001.gdm.meta @ 0:c74a1c7121ec draft default tip

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planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
author geco-team
date Tue, 26 Jun 2018 08:59:49 -0400
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0
c74a1c7121ec planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
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1 ID 1891
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2 antibody CTCF
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3 antibody_antibodyDescription Rabbit polyclonal. Antibody Target: CTCF
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4 antibody_lab Myers, Hardison, Snyder
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5 antibody_label CTCF (07-729)
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6 antibody_lots 1350637 DAM1472197
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7 antibody_orderUrl http://www.millipore.com/catalogue/item/07-729
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8 antibody_tag CTCF
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9 antibody_target CTCF
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10 antibody_targetClass TFSS
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11 antibody_targetDescription CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
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12 antibody_targetId GeneCard:CTCF
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13 antibody_targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCF
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14 antibody_type Antibody
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15 antibody_validation Human_-_CTCF_(07-729)(Western_blot,Motif_Enrichment):human_CTCF_validation_Myers.pdf Human_-_CTCF_(07-729)(Western_blot):human_CTCF_07-729_validation_Snyder.pdf Mouse_-_CTCF(Western_blot):mouse_CTCF_validation_Hardison.pdf
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16 antibody_vendorId 07-729
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17 antibody_vendorName Millipore
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18 avg_score 7.5
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19 cell AG04450
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20 cell_description fetal lung fibroblast
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21 cell_karyotype normal
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22 cell_lineage endoderm
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23 cell_orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04450
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24 cell_organism human
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25 cell_protocol Stam:AG04450_Stam_protocol.pdf
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26 cell_sex Male
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27 cell_tag AG04450
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28 cell_termId BTO:0000763
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29 cell_termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763
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30 cell_tier 2
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31 cell_tissue lung
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32 cell_type Cell Line
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33 cell_vendorId AG04450
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34 cell_vendorName Coriell
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35 composite wgEncodeUwTfbs
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36 control std
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37 controlId wgEncodeEH000930
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38 control_description Standard input signal for most experiments.
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39 control_label Standard Control
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40 control_tag STD
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41 control_type control
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42 dataType ChipSeq
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43 dataType_dataGroup TFBS & Histones
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44 dataType_description Chromatin IP Sequencing
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45 dataType_label ChIP-seq
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46 dataType_tag CHIPSEQ
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47 dataType_type dataType
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48 dataVersion ENCODE Jan 2011 Freeze
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49 dateSubmitted 2010-10-23
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50 dateUnrestricted 2011-07-23
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51 dccAccession wgEncodeEH000976
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52 geoSampleAccession GSM749769
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53 grant Stam
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54 grant_description Stamatoyannopoulous
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55 grant_grantInst University of Washington
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56 grant_label Stamatoyannopoulous
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57 grant_projectName UW
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58 grant_tag STAM
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59 grant_type grant
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60 lab UW
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61 labExpId DS16029
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62 labVersion lmax-v1.0
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63 lab_description Stamatoyannopoulous - University of Washington
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64 lab_grantPi Stam
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65 lab_labInst University of Washington
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66 lab_labPi Stam
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67 lab_labPiFull John Stamatoyannopoulous
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68 lab_label Stamatoyannopoulous - UW
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69 lab_organism human
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70 lab_tag UW
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71 lab_type lab
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72 md5sum 3c6b5bf3eefc28b6bab4ef37916011a1
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73 origAssembly hg19
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74 patient_age 63
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75 project wgEncode
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76 replicate 1
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77 setType exp
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78 sex Male
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79 size 776K
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80 subId 2663
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81 tableName wgEncodeUwTfbsAg04450CtcfStdPkRep1
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82 treatment None
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83 treatment_description No special treatment or protocol applies
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84 treatment_label No treatment or prot
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85 treatment_tag NONE
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86 treatment_type control
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87 type narrowPeak
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88 url http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwTfbs/wgEncodeUwTfbsAg04450CtcfStdPkRep1.narrowPeak.gz
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89 view Peaks
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90 view_description Regions of enriched signal in experiment
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91 view_label Peaks
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92 view_tag PKS
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93 view_type view