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comparison test-data/TG/S_00001.gdm.meta @ 0:c74a1c7121ec draft default tip

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planemo upload for repository https://github.com/lu-brn/gmql-galaxy commit 953ee36ceda5814dc9baa03427bc0eb4ee2e93bd-dirty
author geco-team
date Tue, 26 Jun 2018 08:59:49 -0400
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-1:000000000000 0:c74a1c7121ec
1 ID 1891
2 antibody CTCF
3 antibody_antibodyDescription Rabbit polyclonal. Antibody Target: CTCF
4 antibody_lab Myers, Hardison, Snyder
5 antibody_label CTCF (07-729)
6 antibody_lots 1350637 DAM1472197
7 antibody_orderUrl http://www.millipore.com/catalogue/item/07-729
8 antibody_tag CTCF
9 antibody_target CTCF
10 antibody_targetClass TFSS
11 antibody_targetDescription CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
12 antibody_targetId GeneCard:CTCF
13 antibody_targetUrl http://www.genecards.org/cgi-bin/carddisp.pl?gene=CTCF
14 antibody_type Antibody
15 antibody_validation Human_-_CTCF_(07-729)(Western_blot,Motif_Enrichment):human_CTCF_validation_Myers.pdf Human_-_CTCF_(07-729)(Western_blot):human_CTCF_07-729_validation_Snyder.pdf Mouse_-_CTCF(Western_blot):mouse_CTCF_validation_Hardison.pdf
16 antibody_vendorId 07-729
17 antibody_vendorName Millipore
18 avg_score 7.5
19 cell AG04450
20 cell_description fetal lung fibroblast
21 cell_karyotype normal
22 cell_lineage endoderm
23 cell_orderUrl http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=AG04450
24 cell_organism human
25 cell_protocol Stam:AG04450_Stam_protocol.pdf
26 cell_sex Male
27 cell_tag AG04450
28 cell_termId BTO:0000763
29 cell_termUrl http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=BTO&termId=BTO%3A0000763
30 cell_tier 2
31 cell_tissue lung
32 cell_type Cell Line
33 cell_vendorId AG04450
34 cell_vendorName Coriell
35 composite wgEncodeUwTfbs
36 control std
37 controlId wgEncodeEH000930
38 control_description Standard input signal for most experiments.
39 control_label Standard Control
40 control_tag STD
41 control_type control
42 dataType ChipSeq
43 dataType_dataGroup TFBS & Histones
44 dataType_description Chromatin IP Sequencing
45 dataType_label ChIP-seq
46 dataType_tag CHIPSEQ
47 dataType_type dataType
48 dataVersion ENCODE Jan 2011 Freeze
49 dateSubmitted 2010-10-23
50 dateUnrestricted 2011-07-23
51 dccAccession wgEncodeEH000976
52 geoSampleAccession GSM749769
53 grant Stam
54 grant_description Stamatoyannopoulous
55 grant_grantInst University of Washington
56 grant_label Stamatoyannopoulous
57 grant_projectName UW
58 grant_tag STAM
59 grant_type grant
60 lab UW
61 labExpId DS16029
62 labVersion lmax-v1.0
63 lab_description Stamatoyannopoulous - University of Washington
64 lab_grantPi Stam
65 lab_labInst University of Washington
66 lab_labPi Stam
67 lab_labPiFull John Stamatoyannopoulous
68 lab_label Stamatoyannopoulous - UW
69 lab_organism human
70 lab_tag UW
71 lab_type lab
72 md5sum 3c6b5bf3eefc28b6bab4ef37916011a1
73 origAssembly hg19
74 patient_age 63
75 project wgEncode
76 replicate 1
77 setType exp
78 sex Male
79 size 776K
80 subId 2663
81 tableName wgEncodeUwTfbsAg04450CtcfStdPkRep1
82 treatment None
83 treatment_description No special treatment or protocol applies
84 treatment_label No treatment or prot
85 treatment_tag NONE
86 treatment_type control
87 type narrowPeak
88 url http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwTfbs/wgEncodeUwTfbsAg04450CtcfStdPkRep1.narrowPeak.gz
89 view Peaks
90 view_description Regions of enriched signal in experiment
91 view_label Peaks
92 view_tag PKS
93 view_type view