comparison CoverageReport.xml @ 19:6c7b09220992 draft

new version 0.0.3 (fix on headless R)

18:43427b07e6bb

<tool id="CoverageReport2" name="Panel Coverage Report" version="0.0.2">
  <description></description>
  
  <command interpreter="perl">
    CoverageReport.pl
      ## input files

The BED file containing targets of interest has very specific format requirements. You **must** use the following format::

  Column 1: Chromosome : Use the same syntax as the references used by Galaxy. Check your sam-headers for the correct format. ('chr1' vs '1')
  Column 2: Start Position
  Column 3: End Position
  Column 4: Target Name. Use : "GENE-NAME<space>Exon_number" : This is split on the space after 'GeneName' for correct grouping.
  Column 5: Score : ignored, use '0'
  Column 6: Strand: ignored,'+' or '-'

.. class:: infomark 

19:6c7b09220992

<tool id="CoverageReport2" name="Panel Coverage Report" version="0.0.3">
  <description></description>
  
  <command interpreter="perl">
    CoverageReport.pl
      ## input files

The BED file containing targets of interest has very specific format requirements. You **must** use the following format::

  Column 1: Chromosome : Use the same syntax as the references used by Galaxy. Check your sam-headers for the correct format. ('chr1' vs '1')
  Column 2: Start Position
  Column 3: End Position
  Column 4: Target Name. Use : "GENE-NAME|Exon_number" : This is split on the pipe (or space) after 'GeneName' for correct grouping.Example: "CLIP2|Exon_4"
  Column 5: Score : ignored, use '0'
  Column 6: Strand: ignored,'+' or '-'

.. class:: infomark