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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="twoBitToFa" version="latest">
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4 <install version="1.0">
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5 <actions_group>
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6
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7 <actions os="linux" architecture="x86_64">
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8 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action>
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9 <action type="shell_command">chmod ugo+x *</action>
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10 <action type="move_directory_files">
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11 <source_directory>.</source_directory>
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12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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13 </action>
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14 </actions>
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15
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16 <actions os="darwin" architecture="x86_64">
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17 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action>
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18 <action type="shell_command">chmod ugo+x *</action>
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19 <action type="move_directory_files">
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20 <source_directory>.</source_directory>
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21 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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22 </action>
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23 </actions>
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24
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25 <action type="set_environment">
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26 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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27 </action>
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28 </actions_group>
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29 </install>
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30 <readme>
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31 Downloads and installs the latest toBitToFa from the UCSC.
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32 It will try to install executable files from: UCSC ftp://hgdownload.cse.ucsc.edu/admin/exe/
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33 ( The website doesn't offer previously released versions. )
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34
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35 </readme>
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36 </package>
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37
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38 </tool_dependency>
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