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New Version. VariantDB checks for Genome Build matching using the Galaxy dbkey variable.
author geert-vandeweyer
date Mon, 14 Jul 2014 03:24:28 -0400
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1 Galaxy wrapper for VariantDB Import
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2 ===================================
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4 This wrapper and VariantDB is written by Geert Vandeweyer.
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6 The recommended installation is by means of the toolshed_.
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8 .. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/vcf_to_variantdb
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10 Galaxy should be able to install the needed perl module dependencies automatically
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11 for you. To allow your server to communicate with VariantDB, you must edit the GALAXY_URL environment variable in the file:
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13 <tool_dependency_dir>/environment_settings/GALAXY_URL/geert-vandeweyer/vcf_to_variantdb/<hash_string>/env.sh
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15 to point to the full URL of the server (e.g: http://biominavm-galaxy.biomina.be/galaxy ) where you have installed the wrapper.
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17 Finally, if you also have a private VariantDB instance, you need to add it to the wrapper configuration file, as an extra option.