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New Version. VariantDB checks for Genome Build matching using the Galaxy dbkey variable.
author geert-vandeweyer
date Mon, 14 Jul 2014 03:24:28 -0400
parents d03a63a57e82
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Galaxy wrapper for VariantDB Import
===================================

This wrapper and VariantDB is written by Geert Vandeweyer. 

The recommended installation is by means of the toolshed_.

.. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/vcf_to_variantdb

Galaxy should be able to install the needed perl module dependencies automatically
for you. To allow your server to communicate with VariantDB, you must edit the GALAXY_URL environment variable in the file:

<tool_dependency_dir>/environment_settings/GALAXY_URL/geert-vandeweyer/vcf_to_variantdb/<hash_string>/env.sh

to point to the full URL of the server (e.g: http://biominavm-galaxy.biomina.be/galaxy ) where you have installed the wrapper.

Finally, if you also have a private VariantDB instance, you need to add it to the wrapper configuration file, as an extra option.