diff braker3.xml @ 2:bbe51a1c2b6b draft

planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 791a8381ca30aeb8222e2e43f9119f34a040224b

--- a/braker3.xml	Tue Oct 10 12:25:53 2023 +0000
+++ b/braker3.xml	Tue Oct 24 12:24:40 2023 +0000
@@ -48,7 +48,7 @@
 $augustus.AUGUSTUS_ab_initio
 $augustus.keepCrf
 
-$advanced.UTR
+##$advanced.UTR
 
 $advanced.filterOutShort
 
@@ -110,7 +110,7 @@
         </section>
 
         <section name="advanced" expanded="false" title="Advanced">
-            <param argument="--UTR" type="boolean" checked="false" truevalue="--UTR=on" falsevalue="" label="" help="Experimental, requires RNASeq data (bam) and a softmasked genome" />
+            <!--param argument="-\-UTR" type="boolean" checked="false" truevalue="-\-UTR=on" falsevalue="" label="" help="Experimental, requires RNASeq data (bam) and a softmasked genome" /-->
             <param argument="--filterOutShort" type="boolean" checked="false" truevalue="--filterOutShort" falsevalue="" label="Filter out too short traingin gene predicted by GeneMark-EX" />
             <param argument="--eval" type="data" format="gtf" optional="true" label="Reference set to evaluate predictions" help="using evaluation scripts from GaTech" />
             <param argument="--eval_pseudo" type="data" format="gff3" optional="true" label="File with pseudogenes that will be excluded from accuracy evaluation" />