Mercurial > repos > genouest > braker3
changeset 2:bbe51a1c2b6b draft
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 791a8381ca30aeb8222e2e43f9119f34a040224b
| author | genouest |
|---|---|
| date | Tue, 24 Oct 2023 12:24:40 +0000 |
| parents | bd103884a09c |
| children | 5460380cc057 |
| files | braker3.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/braker3.xml Tue Oct 10 12:25:53 2023 +0000 +++ b/braker3.xml Tue Oct 24 12:24:40 2023 +0000 @@ -48,7 +48,7 @@ $augustus.AUGUSTUS_ab_initio $augustus.keepCrf -$advanced.UTR +##$advanced.UTR $advanced.filterOutShort @@ -110,7 +110,7 @@ </section> <section name="advanced" expanded="false" title="Advanced"> - <param argument="--UTR" type="boolean" checked="false" truevalue="--UTR=on" falsevalue="" label="" help="Experimental, requires RNASeq data (bam) and a softmasked genome" /> + <!--param argument="-\-UTR" type="boolean" checked="false" truevalue="-\-UTR=on" falsevalue="" label="" help="Experimental, requires RNASeq data (bam) and a softmasked genome" /--> <param argument="--filterOutShort" type="boolean" checked="false" truevalue="--filterOutShort" falsevalue="" label="Filter out too short traingin gene predicted by GeneMark-EX" /> <param argument="--eval" type="data" format="gtf" optional="true" label="Reference set to evaluate predictions" help="using evaluation scripts from GaTech" /> <param argument="--eval_pseudo" type="data" format="gff3" optional="true" label="File with pseudogenes that will be excluded from accuracy evaluation" />
--- a/macros.xml Tue Oct 10 12:25:53 2023 +0000 +++ b/macros.xml Tue Oct 24 12:24:40 2023 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">3.0.3</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <xml name="requirements"> <requirement type="package" version="@TOOL_VERSION@">braker3</requirement>