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annotate test-data/ouput_species.gff3 @ 5:c2fc4ac35199 draft default tip

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 54445b041f46b8b3a8e25e90e84f034cdddd2ab1
author genouest
date Tue, 09 Jul 2024 13:09:23 +0000
parents 7bc75dd0f782
children
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1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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1 ##gff-version 3.2.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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2 ##species Arabidopsis
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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3 # f0e00efcbea83c66b69258d11119a691 /tmp/tmpg9ws2pgr/job_working_directory/000/4/home/.local/share/Helixer/models/land_plant/land_plant_v0.3_a_0080.h5
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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4 ##sequence-region NC_034365.1:c72045-70009 1 2037
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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5 NC_034365.1:c72045-70009 Helixer gene 1035 1269 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000001
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
parents:
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6 NC_034365.1:c72045-70009 Helixer mRNA 1035 1269 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
parents:
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7 NC_034365.1:c72045-70009 Helixer exon 1035 1269 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.exon.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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8 NC_034365.1:c72045-70009 Helixer five_prime_UTR 1035 1035 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.five_prime_UTR.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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9 NC_034365.1:c72045-70009 Helixer CDS 1036 1260 . + 0 ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.CDS.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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10 NC_034365.1:c72045-70009 Helixer three_prime_UTR 1261 1269 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.three_prime_UTR.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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11 NC_034365.1:c72045-70009 Helixer gene 1603 2037 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000002
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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12 NC_034365.1:c72045-70009 Helixer mRNA 1603 2037 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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13 NC_034365.1:c72045-70009 Helixer exon 1603 1725 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.exon.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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14 NC_034365.1:c72045-70009 Helixer five_prime_UTR 1603 1606 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.five_prime_UTR.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
parents:
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15 NC_034365.1:c72045-70009 Helixer CDS 1607 1725 . + 0 ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.CDS.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
1b08e39cc52d planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
genouest
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16 NC_034365.1:c72045-70009 Helixer exon 1812 2037 . + . ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.exon.2;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
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7bc75dd0f782 planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit e516933a2c3aa6bcd336a0b5c072893fe9019dd9
genouest
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17 NC_034365.1:c72045-70009 Helixer CDS 1812 2037 . + 1 ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.CDS.2;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1