Mercurial > repos > gga > apollo_feat_from_gff3

view test-data/load_gff3/output.txt @ 17:250745643de2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b
author gga
date Wed, 11 Jan 2023 11:47:48 +0000
parents bb562d95b6cd
children
line wrap: on
line source

{
  "Merlin_1_mRNA": {
    "owner": "admin@local.host",
    "parent_name": "Merlin_1_mRNA",
    "uniquename": "d33cb6e8-0809-442f-84ff-015aff163846",
    "type": {
      "cv": {
        "name": "sequence"
      },
      "name": "mRNA"
    },
    "parent_type": {
      "cv": {
        "name": "sequence"
      },
      "name": "gene"
    },
    "date_creation": 1593424039041,
    "sequence": "Merlin",
    "children": [
      {
        "owner": "None",
        "parent_name": "Merlin_1_mRNA-00001",
        "uniquename": "d33cb6e8-0809-442f-84ff-015aff163846-CDS",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "CDS"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039071,
        "sequence": "Merlin",
        "parent_id": "d33cb6e8-0809-442f-84ff-015aff163846",
        "name": "d33cb6e8-0809-442f-84ff-015aff163846-CDS",
        "location": {
          "strand": 1,
          "is_fmin_partial": true,
          "id": 459,
          "fmin": 1,
          "fmax": 691
        },
        "id": 458,
        "properties": [],
        "date_last_modified": 1593424039095
      },
      {
        "owner": "None",
        "parent_name": "Merlin_1_mRNA-00001",
        "uniquename": "0356ce47-8746-4557-9f45-2b08625ebc63",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039029,
        "sequence": "Merlin",
        "parent_id": "d33cb6e8-0809-442f-84ff-015aff163846",
        "name": "0356ce47-8746-4557-9f45-2b08625ebc63",
        "location": {
          "strand": 1,
          "id": 455,
          "fmin": 1,
          "fmax": 691
        },
        "id": 454,
        "properties": [],
        "date_last_modified": 1593424039078
      }
    ],
    "parent_id": "436dee83-9e76-44c3-94a8-37ac15c57e8e",
    "name": "Merlin_1_mRNA-00001",
    "location": {
      "strand": 1,
      "id": 453,
      "fmin": 1,
      "fmax": 691
    },
    "id": 452,
    "properties": [],
    "date_last_modified": 1593424039249
  },
  "Merlin_2_mRNA": {
    "owner": "admin@local.host",
    "parent_name": "mrna-name",
    "uniquename": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666",
    "type": {
      "cv": {
        "name": "sequence"
      },
      "name": "mRNA"
    },
    "parent_type": {
      "cv": {
        "name": "sequence"
      },
      "name": "gene"
    },
    "date_creation": 1593424039315,
    "sequence": "Merlin",
    "children": [
      {
        "owner": "None",
        "parent_name": "mrna-name-00001",
        "uniquename": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666-CDS",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "CDS"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039321,
        "sequence": "Merlin",
        "parent_id": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666",
        "name": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666-CDS",
        "location": {
          "strand": 1,
          "id": 471,
          "fmin": 751,
          "fmax": 1039
        },
        "id": 470,
        "properties": [],
        "date_last_modified": 1593424039334
      },
      {
        "owner": "None",
        "parent_name": "mrna-name-00001",
        "uniquename": "46e2b6ce-5cf2-4472-b858-9535a374f535",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039312,
        "sequence": "Merlin",
        "parent_id": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666",
        "name": "46e2b6ce-5cf2-4472-b858-9535a374f535",
        "location": {
          "strand": 1,
          "id": 467,
          "fmin": 751,
          "fmax": 1039
        },
        "id": 466,
        "properties": [],
        "date_last_modified": 1593424039328
      }
    ],
    "parent_id": "9d2661e7-c095-426e-a9ce-0e0f9d68c1ca",
    "name": "mrna-name-00001",
    "location": {
      "strand": 1,
      "id": 465,
      "fmin": 751,
      "fmax": 1039
    },
    "id": 464,
    "properties": [],
    "date_last_modified": 1593424039356
  },
  "Merlin_3_mRNA": {
    "owner": "admin@local.host",
    "parent_name": "Merlin_3_mRNA",
    "uniquename": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d",
    "type": {
      "cv": {
        "name": "sequence"
      },
      "name": "mRNA"
    },
    "parent_type": {
      "cv": {
        "name": "sequence"
      },
      "name": "gene"
    },
    "date_creation": 1593424039392,
    "sequence": "Merlin",
    "children": [
      {
        "owner": "None",
        "parent_name": "Merlin_3_mRNA-00001",
        "uniquename": "3fc60774-85c1-4cbd-aca3-1a1a74a2cbf3",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039390,
        "sequence": "Merlin",
        "parent_id": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d",
        "name": "3fc60774-85c1-4cbd-aca3-1a1a74a2cbf3",
        "location": {
          "strand": -1,
          "id": 479,
          "fmin": 1066,
          "fmax": 2011
        },
        "id": 478,
        "properties": [],
        "date_last_modified": 1593424039410
      },
      {
        "owner": "None",
        "parent_name": "Merlin_3_mRNA-00001",
        "uniquename": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d-CDS",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "CDS"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039403,
        "sequence": "Merlin",
        "parent_id": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d",
        "name": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d-CDS",
        "location": {
          "strand": -1,
          "id": 483,
          "fmin": 1066,
          "fmax": 2011
        },
        "id": 482,
        "properties": [],
        "date_last_modified": 1593424039416
      }
    ],
    "parent_id": "6a3cfa63-9957-44c2-855e-8914d14c6773",
    "name": "Merlin_3_mRNA-00001",
    "location": {
      "strand": -1,
      "id": 477,
      "fmin": 1066,
      "fmax": 2011
    },
    "id": 476,
    "properties": [],
    "date_last_modified": 1593424039439
  },
  "Merlin_4_mRNA": {
    "owner": "admin@local.host",
    "parent_name": "Merlin_4_mRNA",
    "uniquename": "4b3f4451-6feb-4a89-85ee-002c03679c4b",
    "type": {
      "cv": {
        "name": "sequence"
      },
      "name": "mRNA"
    },
    "parent_type": {
      "cv": {
        "name": "sequence"
      },
      "name": "gene"
    },
    "date_creation": 1593424039555,
    "sequence": "Merlin",
    "children": [
      {
        "owner": "None",
        "parent_name": "Merlin_4_mRNA-00001",
        "uniquename": "4b3f4451-6feb-4a89-85ee-002c03679c4b-CDS",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "CDS"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039563,
        "sequence": "Merlin",
        "parent_id": "4b3f4451-6feb-4a89-85ee-002c03679c4b",
        "name": "4b3f4451-6feb-4a89-85ee-002c03679c4b-CDS",
        "location": {
          "strand": -1,
          "id": 503,
          "fmin": 2010,
          "fmax": 3066
        },
        "id": 502,
        "properties": [],
        "date_last_modified": 1593424039575
      },
      {
        "owner": "None",
        "parent_name": "Merlin_4_mRNA-00001",
        "uniquename": "4322d1af-5aa0-4777-9bd2-20d87b807d1e",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039553,
        "sequence": "Merlin",
        "parent_id": "4b3f4451-6feb-4a89-85ee-002c03679c4b",
        "name": "4322d1af-5aa0-4777-9bd2-20d87b807d1e",
        "location": {
          "strand": -1,
          "id": 499,
          "fmin": 2010,
          "fmax": 3066
        },
        "id": 498,
        "properties": [],
        "date_last_modified": 1593424039569
      }
    ],
    "parent_id": "71eafcd2-8ef6-4a71-88c2-bcac2f342e28",
    "name": "Merlin_4_mRNA-00001",
    "location": {
      "strand": -1,
      "id": 497,
      "fmin": 2010,
      "fmax": 3066
    },
    "id": 496,
    "properties": [],
    "date_last_modified": 1593424039596
  },
  "Merlin_5_mRNA": {
    "owner": "admin@local.host",
    "parent_name": "Merlin_5_mRNA",
    "uniquename": "19b80336-a138-4276-96e1-116a7787afe8",
    "type": {
      "cv": {
        "name": "sequence"
      },
      "name": "mRNA"
    },
    "parent_type": {
      "cv": {
        "name": "sequence"
      },
      "name": "gene"
    },
    "date_creation": 1593424039700,
    "sequence": "Merlin",
    "children": [
      {
        "owner": "None",
        "parent_name": "Merlin_5_mRNA-00001",
        "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_five_prime_splice_site-4363",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "non_canonical_five_prime_splice_site"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039756,
        "sequence": "Merlin",
        "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
        "name": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_five_prime_splice_site-4363",
        "location": {
          "strand": -1,
          "id": 532,
          "fmin": 4363,
          "fmax": 4363
        },
        "id": 531,
        "properties": [],
        "date_last_modified": 1593424039803
      },
      {
        "owner": "None",
        "parent_name": "Merlin_5_mRNA-00001",
        "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_three_prime_splice_site-4296",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "non_canonical_three_prime_splice_site"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039767,
        "sequence": "Merlin",
        "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
        "name": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_three_prime_splice_site-4296",
        "location": {
          "strand": -1,
          "id": 535,
          "fmin": 4296,
          "fmax": 4296
        },
        "id": 534,
        "properties": [],
        "date_last_modified": 1593424039804
      },
      {
        "owner": "None",
        "parent_name": "Merlin_5_mRNA-00001",
        "uniquename": "f192c0c8-c043-474a-9cba-fe593340a28f",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039691,
        "sequence": "Merlin",
        "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
        "name": "f192c0c8-c043-474a-9cba-fe593340a28f",
        "location": {
          "strand": -1,
          "id": 522,
          "fmin": 3065,
          "fmax": 4296
        },
        "id": 521,
        "properties": [],
        "date_last_modified": 1593424039696
      },
      {
        "owner": "None",
        "parent_name": "Merlin_5_mRNA-00001",
        "uniquename": "31a23617-42b1-4bf1-a65d-45eccdd17e8e",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039699,
        "sequence": "Merlin",
        "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
        "name": "31a23617-42b1-4bf1-a65d-45eccdd17e8e",
        "location": {
          "strand": -1,
          "id": 525,
          "fmin": 4365,
          "fmax": 4796
        },
        "id": 524,
        "properties": [],
        "date_last_modified": 1593424039716
      },
      {
        "owner": "None",
        "parent_name": "Merlin_5_mRNA-00001",
        "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-CDS",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "CDS"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039710,
        "sequence": "Merlin",
        "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
        "name": "19b80336-a138-4276-96e1-116a7787afe8-CDS",
        "location": {
          "strand": -1,
          "id": 529,
          "fmin": 3065,
          "fmax": 4796
        },
        "id": 528,
        "properties": [],
        "date_last_modified": 1593424039722
      }
    ],
    "parent_id": "f380f7b1-2b7d-45cd-8d0b-2519b1b0afee",
    "name": "Merlin_5_mRNA-00001",
    "location": {
      "strand": -1,
      "id": 520,
      "fmin": 3065,
      "fmax": 4796
    },
    "id": 519,
    "properties": [],
    "date_last_modified": 1593424039810
  },
  "Merlin_42_mRNA": {
    "owner": "admin@local.host",
    "parent_name": "Merlin_42_mRNA",
    "uniquename": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92",
    "type": {
      "cv": {
        "name": "sequence"
      },
      "name": "mRNA"
    },
    "parent_type": {
      "cv": {
        "name": "sequence"
      },
      "name": "gene"
    },
    "date_creation": 1593424039850,
    "sequence": "Merlin",
    "children": [
      {
        "owner": "None",
        "parent_name": "Merlin_42_mRNA-00001",
        "uniquename": "6596e6e2-a894-4c0b-98c1-298c65f0c021",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "exon"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039841,
        "sequence": "Merlin",
        "parent_id": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92",
        "name": "6596e6e2-a894-4c0b-98c1-298c65f0c021",
        "location": {
          "strand": -1,
          "id": 543,
          "fmin": 5010,
          "fmax": 6066
        },
        "id": 542,
        "properties": [],
        "date_last_modified": 1593424039847
      },
      {
        "owner": "None",
        "parent_name": "Merlin_42_mRNA-00001",
        "uniquename": "a42c4166-5211-49b9-9110-e5fd41c9d2cb",
        "type": {
          "cv": {
            "name": "sequence"
          },
          "name": "CDS"
        },
        "parent_type": {
          "cv": {
            "name": "sequence"
          },
          "name": "mRNA"
        },
        "date_creation": 1593424039849,
        "sequence": "Merlin",
        "parent_id": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92",
        "name": "a42c4166-5211-49b9-9110-e5fd41c9d2cb",
        "location": {
          "strand": -1,
          "id": 546,
          "fmin": 5288,
          "fmax": 6065,
          "is_fmax_partial": true
        },
        "id": 545,
        "properties": [],
        "date_last_modified": 1593424039867
      }
    ],
    "parent_id": "f7843db6-26da-44f9-ae05-6bb92ca573f6",
    "name": "Merlin_42_mRNA-00001",
    "location": {
      "strand": -1,
      "id": 541,
      "fmin": 5010,
      "fmax": 6066
    },
    "id": 540,
    "properties": [],
    "date_last_modified": 1593424039879
  }
}