diff test-data/dataset_1_files/data/trackList.json @ 10:bc2b80fc7e30 draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dataset_1_files/data/trackList.json	Mon Dec 02 05:49:03 2019 -0500
@@ -0,0 +1,170 @@
+{
+   "formatVersion" : 1,
+   "hideGenomeOptions" : false,
+   "names" : {
+      "type" : "Hash",
+      "url" : "names/"
+   },
+   "plugins" : [
+      {
+         "location" : "https://cdn.jsdelivr.net/gh/TAMU-CPT/blastview@97572a21b7f011c2b4d9a0b5af40e292d694cbef/",
+         "name" : "BlastView"
+      }
+   ],
+   "refSeqs" : "seq/genome.fasta.fai",
+   "shareLink" : true,
+   "show_menu" : true,
+   "show_nav" : true,
+   "show_overview" : true,
+   "show_tracklist" : true,
+   "tracks" : [
+      {
+         "category" : "Reference sequence",
+         "codonStarts" : [
+            "TTG",
+            "CTG",
+            "ATG"
+         ],
+         "codonStops" : [
+            "TAA",
+            "TAG",
+            "TGA"
+         ],
+         "codonTable" : {
+            "AAA" : "K",
+            "AAC" : "N",
+            "AAG" : "K",
+            "AAT" : "N",
+            "ACA" : "T",
+            "ACC" : "T",
+            "ACG" : "T",
+            "ACT" : "T",
+            "AGA" : "R",
+            "AGC" : "S",
+            "AGG" : "R",
+            "AGT" : "S",
+            "ATA" : "I",
+            "ATC" : "I",
+            "ATG" : "M",
+            "ATT" : "I",
+            "CAA" : "Q",
+            "CAC" : "H",
+            "CAG" : "Q",
+            "CAT" : "H",
+            "CCA" : "P",
+            "CCC" : "P",
+            "CCG" : "P",
+            "CCT" : "P",
+            "CGA" : "R",
+            "CGC" : "R",
+            "CGG" : "R",
+            "CGT" : "R",
+            "CTA" : "L",
+            "CTC" : "L",
+            "CTG" : "L",
+            "CTT" : "L",
+            "GAA" : "E",
+            "GAC" : "D",
+            "GAG" : "E",
+            "GAT" : "D",
+            "GCA" : "A",
+            "GCC" : "A",
+            "GCG" : "A",
+            "GCT" : "A",
+            "GGA" : "G",
+            "GGC" : "G",
+            "GGG" : "G",
+            "GGT" : "G",
+            "GTA" : "V",
+            "GTC" : "V",
+            "GTG" : "V",
+            "GTT" : "V",
+            "TAC" : "Y",
+            "TAT" : "Y",
+            "TCA" : "S",
+            "TCC" : "S",
+            "TCG" : "S",
+            "TCT" : "S",
+            "TGC" : "C",
+            "TGG" : "W",
+            "TGT" : "C",
+            "TTA" : "L",
+            "TTC" : "F",
+            "TTG" : "L",
+            "TTT" : "F"
+         },
+         "faiUrlTemplate" : "seq/genome.fasta.fai",
+         "key" : "Reference sequence",
+         "label" : "DNA",
+         "metadata" : {
+            "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1929\">fasta</a>",
+            "dataset_file_ext" : "fasta",
+            "dataset_hid" : "1",
+            "dataset_id" : "7495a4247e72f5f1",
+            "dataset_size" : "171.6 KB",
+            "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>",
+            "history_id" : "d29e465b351a50c9",
+            "history_user_email" : "<a href=\"mailto:[e-mail]\">[e-mail]</a>",
+            "history_user_id" : "17",
+            "metadata_data_lines" : "2881",
+            "metadata_dbkey" : "?",
+            "metadata_sequences" : "1",
+            "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/7495a4247e72f5f1/show_params\">upload1</a>",
+            "tool_tool_id" : "upload1",
+            "tool_tool_version" : "1.1.6"
+         },
+         "seqType" : "dna",
+         "storeClass" : "JBrowse/Store/SeqFeature/IndexedFasta",
+         "type" : "SequenceTrack",
+         "urlTemplate" : "seq/genome.fasta",
+         "useAsRefSeqStore" : 1
+      },
+      {
+         "category" : "Default",
+         "key" : "merlin.gff",
+         "label" : "4ced49b280a72a29f1b922ae1a9664c8_0",
+         "maxHeight" : "600",
+         "menuTemplate" : [
+            {},
+            {},
+            {},
+            {}
+         ],
+         "metadata" : {
+            "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1975\">gff3</a>",
+            "dataset_file_ext" : "gff3",
+            "dataset_hid" : "2",
+            "dataset_id" : "b02ee2031011d9cf",
+            "dataset_size" : "110.3 KB",
+            "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>",
+            "history_id" : "d29e465b351a50c9",
+            "history_user_email" : "<a href=\"mailto:[e-mail]\">[e-mail]</a>",
+            "history_user_id" : "17",
+            "metadata_attributes" : "4",
+            "metadata_columns" : "9",
+            "metadata_comment_lines" : "2",
+            "metadata_data_lines" : "1228",
+            "metadata_dbkey" : "?",
+            "metadata_delimiter" : "__tc__",
+            "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/b02ee2031011d9cf/show_params\">upload1</a>",
+            "tool_tool_id" : "upload1",
+            "tool_tool_version" : "1.1.6"
+         },
+         "overrideDraggable" : false,
+         "overridePlugins" : false,
+         "storeClass" : "JBrowse/Store/SeqFeature/GFF3Tabix",
+         "style" : {
+            "className" : "feature",
+            "color" : "#a6cee3",
+            "description" : "note,description",
+            "label" : "product,name,id"
+         },
+         "trackType" : "NeatHTMLFeatures/View/Track/NeatFeatures",
+         "type" : "NeatHTMLFeatures/View/Track/NeatFeatures",
+         "urlTemplate" : "raw/4ced49b280a72a29f1b922ae1a9664c8_0.gff.gz"
+      }
+   ],
+   "view" : {
+      "trackPadding" : 20
+   }
+}