Mercurial > repos > gga > apollo_list_organism
view test-data/dataset_1_files/data/trackList.json @ 17:8dc690130172 draft default tip
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b
author | gga |
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date | Wed, 11 Jan 2023 11:48:41 +0000 |
parents | bc2b80fc7e30 |
children |
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{ "formatVersion" : 1, "hideGenomeOptions" : false, "names" : { "type" : "Hash", "url" : "names/" }, "plugins" : [ { "location" : "https://cdn.jsdelivr.net/gh/TAMU-CPT/blastview@97572a21b7f011c2b4d9a0b5af40e292d694cbef/", "name" : "BlastView" } ], "refSeqs" : "seq/genome.fasta.fai", "shareLink" : true, "show_menu" : true, "show_nav" : true, "show_overview" : true, "show_tracklist" : true, "tracks" : [ { "category" : "Reference sequence", "codonStarts" : [ "TTG", "CTG", "ATG" ], "codonStops" : [ "TAA", "TAG", "TGA" ], "codonTable" : { "AAA" : "K", "AAC" : "N", "AAG" : "K", "AAT" : "N", "ACA" : "T", "ACC" : "T", "ACG" : "T", "ACT" : "T", "AGA" : "R", "AGC" : "S", "AGG" : "R", "AGT" : "S", "ATA" : "I", "ATC" : "I", "ATG" : "M", "ATT" : "I", "CAA" : "Q", "CAC" : "H", "CAG" : "Q", "CAT" : "H", "CCA" : "P", "CCC" : "P", "CCG" : "P", "CCT" : "P", "CGA" : "R", "CGC" : "R", "CGG" : "R", "CGT" : "R", "CTA" : "L", "CTC" : "L", "CTG" : "L", "CTT" : "L", "GAA" : "E", "GAC" : "D", "GAG" : "E", "GAT" : "D", "GCA" : "A", "GCC" : "A", "GCG" : "A", "GCT" : "A", "GGA" : "G", "GGC" : "G", "GGG" : "G", "GGT" : "G", "GTA" : "V", "GTC" : "V", "GTG" : "V", "GTT" : "V", "TAC" : "Y", "TAT" : "Y", "TCA" : "S", "TCC" : "S", "TCG" : "S", "TCT" : "S", "TGC" : "C", "TGG" : "W", "TGT" : "C", "TTA" : "L", "TTC" : "F", "TTG" : "L", "TTT" : "F" }, "faiUrlTemplate" : "seq/genome.fasta.fai", "key" : "Reference sequence", "label" : "DNA", "metadata" : { "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1929\">fasta</a>", "dataset_file_ext" : "fasta", "dataset_hid" : "1", "dataset_id" : "7495a4247e72f5f1", "dataset_size" : "171.6 KB", "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>", "history_id" : "d29e465b351a50c9", "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>", "history_user_id" : "17", "metadata_data_lines" : "2881", "metadata_dbkey" : "?", "metadata_sequences" : "1", "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/7495a4247e72f5f1/show_params\">upload1</a>", "tool_tool_id" : "upload1", "tool_tool_version" : "1.1.6" }, "seqType" : "dna", "storeClass" : "JBrowse/Store/SeqFeature/IndexedFasta", "type" : "SequenceTrack", "urlTemplate" : "seq/genome.fasta", "useAsRefSeqStore" : 1 }, { "category" : "Default", "key" : "merlin.gff", "label" : "4ced49b280a72a29f1b922ae1a9664c8_0", "maxHeight" : "600", "menuTemplate" : [ {}, {}, {}, {} ], "metadata" : { "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1975\">gff3</a>", "dataset_file_ext" : "gff3", "dataset_hid" : "2", "dataset_id" : "b02ee2031011d9cf", "dataset_size" : "110.3 KB", "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>", "history_id" : "d29e465b351a50c9", "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>", "history_user_id" : "17", "metadata_attributes" : "4", "metadata_columns" : "9", "metadata_comment_lines" : "2", "metadata_data_lines" : "1228", "metadata_dbkey" : "?", "metadata_delimiter" : "__tc__", "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/b02ee2031011d9cf/show_params\">upload1</a>", "tool_tool_id" : "upload1", "tool_tool_version" : "1.1.6" }, "overrideDraggable" : false, "overridePlugins" : false, "storeClass" : "JBrowse/Store/SeqFeature/GFF3Tabix", "style" : { "className" : "feature", "color" : "#a6cee3", "description" : "note,description", "label" : "product,name,id" }, "trackType" : "NeatHTMLFeatures/View/Track/NeatFeatures", "type" : "NeatHTMLFeatures/View/Track/NeatFeatures", "urlTemplate" : "raw/4ced49b280a72a29f1b922ae1a9664c8_0.gff.gz" } ], "view" : { "trackPadding" : 20 } }