annotate macros.xml @ 0:d2aeb7a02bb2 draft default tip

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/askomics commit f745b23c84a615bf434d717c8c0e553a012f0268

<?xml version="1.0" encoding="UTF-8"?>

<macros>
    <!-- Requirements -->
    <xml name='requirements'>
        <requirements>
            <requirement type='package' version='0.4.3'>askocli</requirement>
        </requirements>
    </xml>

    <!-- Version -->
    <token name='@WRAPPER_VERSION@'>0.1</token>

    <!-- Help -->
    <token name='@HELP@'><![CDATA[
        AskOmics provide a visual representation of the user abstraction as a graph. 
        By starting from a node of interest and iteratively selecting its neighbors, 
        the user creates a path on an abstraction graph. This path can then be transformed 
        into a SPARQL query that can be executed on the original dataset.
    ]]></token>

    <!-- Citation -->
    <xml name='citation'>
        <citations>
            <citation type='bibtex'>
            @inproceedings{legeai:hal-01391080,
              TITLE = {{BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction}},
              AUTHOR = {Legeai, Fabrice and Bettembourg, Charles and Bretaudeau, Anthony and Chaussin, Yvanne and Dameron, Olivier and Tagu, Denis},
              URL = {https://hal.inria.fr/hal-01391080},
              BOOKTITLE = {{XXVth International Congress of Entomology 2016}},
              ADDRESS = {Orlando, Florida, United States},
              YEAR = {2016},
              MONTH = Sep,
              KEYWORDS = {AskOmics ;  Semantic Web ;  RDF ;  SPARQL ;  data integration},
              HAL_ID = {hal-01391080},
              HAL_VERSION = {v1},
            }
            </citation>
        </citations>
    </xml>

    <!-- AskOmics server location -->
    <xml name='askomics_loc'>
        <section name='loc' title='AskOmics location' expanded='False'>
            <param name='url'
                   type='text'
                   label='AskOmics URL'
                   optional='true'
                   value="http://localhost:6543"
                   argument='-a' />
        </section>
    </xml>

    <token name='@URL@'><![CDATA[$loc.url]]></token>

    <!-- Environment variables -->
    <token name='@ENV_URL@'><![CDATA[\$ASKOMICS_URL]]></token>

    <!-- Authentication -->
    <xml name='askomics_auth'>
        <section name='auth' title='AskOmics authentication' expanded='True'>
            <param name='apikey'
                   type='text'
                   label='API key'
                   value="xvB2YBK8pz4I96SkDN64"
                   argument='-k' />
        </section>
    </xml>

    <token name='@APIKEY@'><![CDATA['$auth.apikey']]></token>

    <!-- Tests -->
    <xml name='test_asko_loc'>
        <section name='loc'>
            <param name='url' value='http://example.com' />
        </section>
    </xml>
    <xml name='test_asko_auth'>
        <section name='auth'>
            <param name='apikey' value='00000000000000000000' />
        </section>
    </xml>

</macros>