annotate expression_add_expression.xml @ 0:c09e35ef9d09 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864

<?xml version="1.0"?>
<tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0">
 <description></description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
    <code file="chado.py"/>
	<command detect_errors="aggressive"><![CDATA[
@AUTH@

chakin expression add_expression
'$organism_id'
'$analysis_id'
'$file_path'

 > $results
    ]]></command>
	<inputs>
	    <!-- arguments -->
		<param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
		<param argument="analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" />
		<param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" />

		<expand macro="wait_for"/>
	</inputs>
	<outputs>
		<data format="txt" name="results"/>
	</outputs>
	<help>
Add an expression matrix file to the database

@HELP@
	</help>
</tool>