Mercurial > repos > gga > chado_expression_get_biomaterials
comparison expression_get_biomaterials.xml @ 5:6273615add1e draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
| author | gga |
|---|---|
| date | Mon, 08 Jul 2019 05:39:57 -0400 |
| parents | 426fba75486d |
| children | ad6285f560a5 |
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| 4:426fba75486d | 5:6273615add1e |
|---|---|
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <code file="chado.py"/> | 8 <code file="chado.py"/> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 @AUTH@ | 10 @START_PSQL@ && |
| 11 | 11 |
| 12 chakin expression get_biomaterials | 12 chakin expression get_biomaterials |
| 13 | 13 |
| 14 #if $provider_id: | 14 #if $provider_id: |
| 15 --provider_id '$provider_id' | 15 --provider_id '$provider_id' |
| 26 #if $analysis_id: | 26 #if $analysis_id: |
| 27 --analysis_id '$analysis_id' | 27 --analysis_id '$analysis_id' |
| 28 #end if | 28 #end if |
| 29 | 29 |
| 30 | jq -S . > '$results' | 30 | jq -S . > '$results' |
| 31 | |
| 32 && @STOP_PSQL@ | |
| 31 ]]></command> | 33 ]]></command> |
| 32 <inputs> | 34 <inputs> |
| 35 <expand macro="psql_target"/> | |
| 33 <!-- options --> | 36 <!-- options --> |
| 34 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> | 37 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> |
| 35 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> | 38 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> |
| 36 <param name="provider_id" label="Provider Id" argument="provider_id" type="text" help="Limit query to the selected provider" optional="true" /> | 39 <param name="provider_id" label="Provider Id" argument="provider_id" type="text" help="Limit query to the selected provider" optional="true" /> |
| 37 <param name="biomaterial_id" label="Biomaterial Id" argument="biomaterial_id" type="text" help="Limit query to the selected biomaterial id" optional="true" /> | 40 <param name="biomaterial_id" label="Biomaterial Id" argument="biomaterial_id" type="text" help="Limit query to the selected biomaterial id" optional="true" /> |