Mercurial > repos > gga > chado_expression_get_biomaterials

diff expression_get_biomaterials.xml @ 5:6273615add1e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:39:57 -0400
parents 426fba75486d
children ad6285f560a5
line wrap: on
line diff
--- a/expression_get_biomaterials.xml	Tue Mar 05 05:18:40 2019 -0500
+++ b/expression_get_biomaterials.xml	Mon Jul 08 05:39:57 2019 -0400
@@ -7,7 +7,7 @@
     <expand macro="requirements"/>
     <code file="chado.py"/>
     <command detect_errors="aggressive"><![CDATA[
-@AUTH@
+@START_PSQL@ &&
 
 chakin expression get_biomaterials
 
@@ -28,8 +28,11 @@
 #end if
 
 | jq -S . > '$results'
+
+&& @STOP_PSQL@
     ]]></command>
     <inputs>
+      <expand macro="psql_target"/>
         <!-- options -->
         <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
         <param argument="analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" optional="true" />