Mercurial > repos > gga > chado_feature_load_featureprops

comparison feature_load_featureprops.xml @ 8:402032cb55a1 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 11:08:02 -0500
parents 1f90fb200b4d
children 46b3ccaa24ca
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7:bece12dfcf6b 8:402032cb55a1
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="feature_load_featureprops" name="Chado load feature properties" version="@WRAPPER_VERSION@.0"> 2 <tool id="feature_load_featureprops" name="Chado load feature properties" version="@WRAPPER_VERSION@.0">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @AUTH@
11 11
12 chakin feature load_featureprops 12 chakin feature load_featureprops
13 '$tab_file' 13 '$tab_file'
14 '$analysis_id' 14 '$analysis_id'
21 21
22 $match_on_name 22 $match_on_name
23 23
24 | jq -S . > $results 24 | jq -S . > $results
25 ]]></command> 25 ]]></command>
26 <inputs> 26 <inputs>
27 <!-- arguments --> 27 <!-- arguments -->
28 <param name="tab_file" label="Tab File" argument="tab_file" type="data" format="tabular" help="Path to the tabular file to load" /> 28 <param name="tab_file" label="Tab File" argument="tab_file" type="data" format="tabular" help="Path to the tabular file to load" />
29 <param argument="--analysis_id" 29 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
30 type="select" 30 <param argument="organism" type="select" dynamic_options="list_organisms()" label="Organism" />
31 dynamic_options="list_analyses()" 31 <param name="prop_type" label="Property type" argument="prop_type" type="text" help="Type of the feature property (cvterm will be created if it doesn't exist)" />
32 label="Analysis" />
33 <param argument="--organism"
34 type="select"
35 dynamic_options="list_organisms()"
36 label="Organism" />
37 <param name="prop_type" label="Property type" argument="prop_type" type="text" help="Type of the feature property (cvterm will be created if it doesn't exist)" />
38 32
39 <!-- options --> 33 <!-- options -->
40 <param name="feature_type" label="Feature type" argument="feature_type" type="text" help="Type of the target features in sequence ontology (will speed up loading if specified)" optional="true" /> 34 <param name="feature_type" label="Feature type" argument="--feature_type" type="text" help="Type of the target features in sequence ontology (will speed up loading if specified)" optional="true" />
41 <param name="match_on_name" label="Match on name" argument="match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match features using their name instead of their uniquename" /> 35 <param name="match_on_name" label="Match on name" argument="--match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match features using their name instead of their uniquename" />
42 36
43 <expand macro="wait_for"/> 37 <expand macro="wait_for"/>
44 38
45 </inputs> 39 </inputs>
46 <outputs> 40 <outputs>
47 <data format="json" name="results"/> 41 <data format="json" name="results"/>
48 </outputs> 42 </outputs>
49 <help> 43 <help>
50 Load feature properties from a tabular file (Column1: feature name or uniquename, Column2: property value) 44 Load feature properties from a tabular file (Column1: feature name or uniquename, Column2: property value)
51 45
52 @HELP@ 46 @HELP@
53 </help> 47 </help>
54 </tool> 48 </tool>