view phylogeny_gene_order.xml @ 7:2c123c3a7100 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit c5b949de324bf86c88c680767e56ac77685cd14c
author gga
date Mon, 05 Nov 2018 12:09:58 -0500
parents 9bd557c70bcb
children 38998568205a
line wrap: on
line source

<?xml version="1.0"?>
<tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0">
 	<description>for phylogeny module</description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
	<command detect_errors="aggressive"><![CDATA[
@AUTH@

chakin phylogeny gene_order

$nuke

 > $results
    ]]></command>
	<inputs>
    <!-- options -->
		<param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" />
	    <expand macro="wait_for"/>

	</inputs>
	<outputs>
		<data format="txt" name="results"/>
	</outputs>
	<help>
Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/).

@HELP@
	</help>
</tool>