Mercurial > repos > gga > chado_phylogeny_gene_order
changeset 8:38998568205a draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author | gga |
---|---|
date | Fri, 23 Nov 2018 10:58:35 -0500 |
parents | 2c123c3a7100 |
children | c0e0228f7d33 |
files | chado.py macros.xml phylogeny_gene_order.xml |
diffstat | 3 files changed, 9 insertions(+), 3 deletions(-) [+] |
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--- a/chado.py Mon Nov 05 12:09:58 2018 -0500 +++ b/chado.py Fri Nov 23 10:58:35 2018 -0500 @@ -406,6 +406,7 @@ # there. data = _list_organisms(ci, *args, **kwargs) cache[cacheKey] = data + ci.session.close() return data try: # The cache key may or may not be in the cache at this point, it @@ -413,12 +414,14 @@ # when we checked above and now, so we reference the object from the # cache in preparation to return. data = cache[cacheKey] + ci.session.close() return data except KeyError: # If access fails due to eviction, we will fail over and can ensure that # data is inserted. data = _list_organisms(ci, *args, **kwargs) cache[cacheKey] = data + ci.session.close() return data @@ -447,6 +450,7 @@ data = _list_analyses(ci, *args, **kwargs) cache[cacheKey] = data + ci.session.close() return data try: # The cache key may or may not be in the cache at this point, it @@ -454,12 +458,14 @@ # when we checked above and now, so we reference the object from the # cache in preparation to return. data = cache[cacheKey] + ci.session.close() return data except KeyError: # If access fails due to eviction, we will fail over and can ensure that # data is inserted. data = _list_analyses(ci, *args, **kwargs) cache[cacheKey] = data + ci.session.close() return data
--- a/macros.xml Mon Nov 05 12:09:58 2018 -0500 +++ b/macros.xml Fri Nov 23 10:58:35 2018 -0500 @@ -2,7 +2,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.2">python-chado</requirement> + <requirement type="package" version="2.2.3">python-chado</requirement> <requirement type="package" version="1.5">jq</requirement> <yield/> </requirements> @@ -16,7 +16,7 @@ </stdio> </xml> - <token name="@WRAPPER_VERSION@">2.2.2</token> + <token name="@WRAPPER_VERSION@">2.2.3</token> <xml name="citation"> <citations>
--- a/phylogeny_gene_order.xml Mon Nov 05 12:09:58 2018 -0500 +++ b/phylogeny_gene_order.xml Fri Nov 23 10:58:35 2018 -0500 @@ -16,7 +16,7 @@ ]]></command> <inputs> <!-- options --> - <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> + <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> <expand macro="wait_for"/> </inputs>